[1] "2025-04-29 23:03:13 MDT" [1] "1501" "150204" "d035" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150204a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85294 63 [1] 85294 [1] 85294 [1] "testing skipping spike filter" [1] 85294 [1] 85294 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:03:17 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.835, ave o2scale2 = 0.755" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "79 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.835, ave o2scale2 = 0.755" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "79 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:03:18 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:03:18 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:03:28 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:03:29 MDT" [1] "reading in recalculated plot titles" [1] "Removed 79 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 6 row(s) with variable TFCELL" [1] "TEMP: 1334 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:03:34 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 395 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.938 co2off = 392.55 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.02 minutes" [1] "Shortest Cal: 0 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 170 179 0.1197882 0.1260509 0.1236169 3 -16.862422 272.6907 3 4 180 189 0.1267501 0.1330135 0.1305760 3 12.566445 134.8430 4 3 190 199 0.1337088 0.1399719 0.1389284 3 2.699828 218.8664 6 4 468 476 0.3292245 0.3347950 0.3327064 2 12.528589 128.0617 7 2 477 486 0.3354919 0.3417511 0.3393169 2 -16.909437 282.6065 10 2 653 661 0.4839851 0.4895486 0.4874625 2 -16.990170 274.0000 11 4 662 669 0.4916389 0.4965071 0.4947686 2 12.435375 130.6975 14 4 897 906 0.6851186 0.6913823 0.6889449 2 12.402227 136.9188 15 2 907 916 0.6920777 0.6983410 0.6959045 2 -17.034937 276.0468 17 2 1184 1191 0.8938668 0.9001297 0.8983897 3 -16.999333 279.5469 18 4 1192 1201 0.9008252 0.9070885 0.9046530 3 12.445055 132.9968 19 3 1202 1211 0.9077839 0.9140431 0.9130000 3 2.584031 219.9752 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.203928 1.330116 -6.122181e-04 -1.81841847 0.002456712 6.554854 3 1.203882 1.330058 -5.046151e-05 -0.62127084 0.005891261 6.898355 4 1.204067 1.330305 7.675140e-04 2.49274578 0.002142978 3.229213 6 1.202095 1.328441 -2.447055e-04 -1.70949892 0.002383717 9.931213 7 1.201935 1.328351 -9.836126e-04 1.69846429 0.005215769 10.182640 10 1.195971 1.322491 -4.195173e-03 0.73431931 0.009254413 8.370544 11 1.195962 1.322520 -1.815408e-03 1.51779836 0.003628662 6.662861 14 1.193799 1.320312 2.375280e-04 1.11756176 0.005007019 4.915997 15 1.193889 1.320431 -1.745785e-03 0.62593904 0.005163401 3.391941 17 1.195298 1.321942 -5.305998e-04 -3.67111031 0.001723762 7.411745 18 1.195240 1.321845 1.202793e-03 -0.05439985 0.003989025 3.057548 19 1.195312 1.321929 -4.680056e-04 0.95331317 0.005089928 1.514974 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.538 co2l1 = 0.938 co2l0 = 0.006" [1] "co2l0 = -143.19 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1158 1-min values rejected as stack air" [1] "0 out of 1158 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"