[1] "2025-04-29 23:02:42 MDT" [1] "1501" "150203" "d034" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150203a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:02:46 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.839, ave o2scale2 = 0.757" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "72 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.839, ave o2scale2 = 0.757" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "74 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:02:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:02:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:03:04 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:03:06 MDT" [1] "reading in recalculated plot titles" [1] "Removed 74 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1362 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:03:08 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 395 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.939 co2off = 397.48 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 7.94 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 107 116 0.07591661 0.0821794 0.07974382 2 12.354680 135.0545 3 2 117 126 0.08287503 0.0891386 0.08670383 2 -17.089898 279.1229 5 2 407 416 0.28467543 0.2909386 0.28850277 3 -17.017047 281.5996 6 4 417 426 0.29163394 0.2978965 0.29546207 3 12.433266 132.8577 7 5 427 436 0.29859196 0.3048546 0.30381155 NA 1.205750 198.7419 8 3 437 446 0.30555402 0.3118170 0.31077187 3 2.575523 207.8623 10 4 706 715 0.49346314 0.4997259 0.49729155 2 12.489891 133.6253 11 2 716 725 0.50042138 0.5066857 0.50425026 2 -16.939203 284.2232 13 2 993 999 0.70226163 0.7064385 0.70504744 3 -16.933550 276.9554 14 4 1000 1003 0.71339699 0.7154835 0.71513579 3 12.480469 136.9658 15 3 1004 1007 0.72035231 0.7224387 0.72348219 3 2.633938 218.0135 19 4 1258 1267 0.91099954 0.9172627 0.91482694 2 12.492820 115.7201 20 2 1268 1276 0.91795828 0.9242177 0.92213095 2 -16.942450 290.9467 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.183591 1.311942 2.514335e-04 0.41547790 0.0019838740 3.587871 3 1.183911 1.312317 -1.543827e-03 -0.18932148 0.0073200844 3.281991 5 1.189362 1.318374 -8.034134e-05 -1.08749569 0.0026482284 5.614103 6 1.189410 1.318444 4.742039e-03 2.22377010 0.0128039715 6.027580 7 1.189508 1.318557 -3.994508e-03 3.48897166 0.0028284271 4.556560 8 1.189871 1.318932 7.197445e-04 -2.19541413 0.0037989275 3.107872 10 1.194047 1.323619 4.802735e-04 -0.02619005 0.0027049372 3.491436 11 1.194308 1.323902 -2.809204e-03 1.80841813 0.0076960790 7.071672 13 1.195577 1.325140 8.737590e-05 1.45159035 0.0009007375 3.102990 14 1.193990 1.323274 8.112831e-04 -8.95714314 0.0005745243 6.343157 15 1.195530 1.324992 3.743449e-04 8.18401882 0.0002651650 10.640341 19 1.198429 1.327366 8.495219e-04 8.38644748 0.0031699337 24.963661 20 1.198632 1.327327 -2.495121e-03 4.33946003 0.0059276125 21.947330 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.56 co2l1 = 0.938 co2l0 = 0" [1] "co2l0 = -141.41 co2l1 = 0.211" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "23 out of 300 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "277 out of 1184 1-min values rejected as stack air" [1] "275 out of 1004 Line 1 1-min values rejected as stack air" [1] "2 out of 180 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"