[1] "2025-04-29 23:01:35 MDT" [1] "1501" "150201" "d032" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150201a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:01:39 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.852, ave o2scale2 = 0.769" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "40 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.852, ave o2scale2 = 0.769" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "39 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:01:39 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:01:39 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:01:56 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:01:58 MDT" [1] "reading in recalculated plot titles" [1] "Removed 39 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1396 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:02:05 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 395 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.938 co2off = 387.42 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.02 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 277 285 0.1970799 0.2033428 0.2009569 3 -17.181068 278.4774 3 4 286 295 0.2040382 0.2103018 0.2078671 3 12.290391 123.6477 4 3 296 305 0.2109979 0.2172638 0.2162178 3 2.416844 218.1274 6 4 576 585 0.4058414 0.4121053 0.4096683 2 12.321531 132.0796 7 2 586 595 0.4128009 0.4190637 0.4166274 2 -17.143133 280.8293 10 2 871 880 0.6148206 0.6210844 0.6186491 3 -17.191609 279.1714 11 4 881 890 0.6217799 0.6280451 0.6256091 3 12.271125 131.5503 12 3 891 900 0.6287423 0.6350053 0.6339603 3 2.402656 214.5115 14 4 1170 1179 0.8235579 0.8298209 0.8273869 2 12.203930 139.1414 15 2 1180 1189 0.8305165 0.8367801 0.8343453 2 -17.262125 272.4217 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.174792 1.301523 -0.0003673516 -0.9931354297 0.002807131 4.791517 3 1.174848 1.301652 0.0017890194 -1.3060051048 0.005521038 7.032112 4 1.174760 1.301560 -0.0004989147 3.8362751809 0.003546723 5.438183 6 1.175921 1.302868 0.0019842380 1.3013453084 0.005680480 4.990038 7 1.176037 1.303013 -0.0020563122 0.0356936337 0.006574389 1.233914 10 1.174500 1.301402 -0.0006338652 0.0002088849 0.001915267 4.581813 11 1.174260 1.301161 0.0006090586 -7.8660429785 0.003646335 20.893721 12 1.174374 1.301197 0.0017577191 0.8313603179 0.004500620 4.472671 14 1.171446 1.298064 0.0008684276 2.7069342819 0.004020655 7.856380 15 1.171333 1.298049 0.0001123236 -1.2121871192 0.005379877 8.659428 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.741 co2l1 = 0.937 co2l0 = 0.004" [1] "co2l0 = -142.68 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "38 out of 250 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "212 out of 1241 1-min values rejected as stack air" [1] "212 out of 1241 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"