[1] "2017-04-06 17:56:07 MDT"
[1] "1501"   "150130" "d030"  
[1] "reading in high rate data from /scr/raf/stephens/GO2DAT/DIRECT/150130a.hr"
[1] "reading in hr file header"
Read 27 items
[1] "Parsing HR flags"
[1] "Doing high rate calculations (mean, sd, slope, shape)"
[1] "recalculating jog averages"
[1] "recalculating jog sds"
[1] "recalculating jog slopes"
[1] "Parsing MR flags"
[1] "Calculating derived concentration values"
[1] "2017-04-06 17:56:19 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.763"
[1] "27 MR delta diff NA values ( most likely because WTDIFF > 200 )"
[1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.763"
[1] "27 RC delta diff NA values ( most likely because WTDIFF > 200 )"
[1] "2017-04-06 17:56:22 MDT"
[1] "Plotting 1-second data"
[1] "2017-04-06 17:56:22 MDT"
[1] "reading in high-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 17:56:38 MDT"
[1] "reading in medium-rate plot titles"
[1] "Plotting recalculated 1-minute data"
[1] "2017-04-06 17:56:40 MDT"
[1] "reading in recalculated plot titles"
[1] "Removed 27 row(s) with NAs in them ( most likely because WTDIFF > 200 )"
[1] "Removed 57 row(s) with high TFRIDGE"
[1] "TEMP: 1351 0 TRUE"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 17:56:46 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 376.46 O2 = -483.7"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.8 O2 = -548.1"
[1] "position 3 cylinder CC339490 description: LS CO2 = 404.04 O2 = -643"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.91 O2 = -579.3"
[1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.32 O2 = -763"
[1] "Nominal linear calibrations:"
[1] "co2scl = 0.937  co2off = 387.19 o2scla = 1  o2offa = 0"
[1] "Finding cal and sample periods"
[1] "Plotting MR jog shapes"
[1] "Median Cal: 9.01 minutes"
[1] "Average Cal: 8.8 minutes"
[1] "Shortest Cal: 8.02 minutes"
[1] "Longest Cal: 9.02 minutes"
[1] "Plotting calibration sds and slopes"
[1] "cbind(calstart,calend)"
     calstart calend
[1,]        1      3
[2,]        4      5
[3,]        6      9
[4,]       10     11
[5,]       12     14
[1] "calperiods$grp"
 [1]  3  3  3  2  2  3  3 NA  3  2  2  3  3  3
[1] "Plotting calibration fits"
[1] "Average calibration parameters:"
[1] "co2l0 = 392.361  co2l1 = 0.936 co2l0 = 0.003"
[1] "co2l0 = -143  co2l1 = 0.213"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "110 out of 350 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "240 out of 1172 1-min values rejected as stack air"
[1] "240 out of 1172 Line 1 1-min values rejected as stack air"
[1] "0 out of 0 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "making html"