[1] "2025-04-29 23:00:27 MDT" [1] "1501" "150130" "d030" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150130a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 23:00:31 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.763" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "27 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.763" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "27 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 23:00:31 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 23:00:31 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:00:47 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:00:48 MDT" [1] "reading in recalculated plot titles" [1] "Removed 27 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 57 row(s) with high TFRIDGE" [1] "TEMP: 1351 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:00:52 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 395 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.938 co2off = 387.37 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.8 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 96 104 0.1102288 0.1157963 0.1137097 3 -16.950098 280.3247 3 4 105 114 0.1164918 0.1227546 0.1203204 3 12.505023 128.7616 4 3 115 124 0.1234502 0.1297101 0.1286670 3 2.633805 214.8158 6 4 390 399 0.3182731 0.3245360 0.3220996 2 12.480891 139.1394 7 2 400 409 0.3252315 0.3314943 0.3290590 2 -16.974742 277.8567 9 2 683 692 0.5270174 0.5332766 0.5308421 3 -16.973602 288.7351 10 4 693 702 0.5339722 0.5402314 0.5377972 3 12.471484 129.1668 11 5 703 712 0.5409269 0.5471896 0.5461464 NA 1.428688 198.2135 12 3 713 722 0.5478889 0.5541481 0.5531048 3 2.599977 213.3269 14 4 981 989 0.7364727 0.7420448 0.7399560 2 12.453795 132.4376 15 2 990 999 0.7427405 0.7490000 0.7465655 2 -16.998539 280.0246 17 2 1273 1281 0.9452341 0.9508020 0.9487154 3 -17.005920 280.2456 18 4 1282 1291 0.9514974 0.9577604 0.9553261 3 12.460422 123.7485 19 3 1292 1301 0.9584595 0.9647223 0.9636763 3 2.597094 219.8727 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.182443 1.309847 -0.0007778469 0.5490492 2.062139e-03 3.414196 3 1.182499 1.309773 0.0006960751 0.7296187 3.937137e-03 12.516579 4 1.182349 1.309683 -0.0010511631 1.3783003 3.599423e-03 1.842281 6 1.183536 1.310971 -0.0008581031 3.0428120 2.306520e-03 11.697253 7 1.183638 1.311120 -0.0023926622 0.8864132 6.920421e-03 6.805548 9 1.183405 1.311004 0.0015311464 0.6528813 4.989155e-03 7.960241 10 1.183327 1.310930 -0.0002690327 -2.2868220 3.975336e-03 7.044105 11 1.183099 1.310695 0.0001248387 -0.3855327 8.838835e-05 3.031678 12 1.183138 1.310765 -0.0011966898 0.6349301 5.185180e-03 1.734533 14 1.183502 1.311223 0.0006401513 0.7104998 1.697008e-03 4.534409 15 1.183422 1.311121 -0.0012174988 2.5461716 3.524616e-03 8.446979 17 1.181370 1.309104 0.0024160110 -2.5862980 5.372421e-03 9.310539 18 1.181250 1.308891 0.0039702594 -2.8943356 1.017024e-02 7.894646 19 1.181219 1.308844 -0.0023021598 0.3320124 5.793026e-03 2.086629 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.547 co2l1 = 0.937 co2l0 = 0.005" [1] "co2l0 = -141.49 co2l1 = 0.211" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "110 out of 350 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "240 out of 1172 1-min values rejected as stack air" [1] "240 out of 1172 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"