[1] "2025-04-29 22:59:55 MDT" [1] "1501" "150129" "d029" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150129a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:59:59 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.855, ave o2scale2 = 0.772" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "43 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.855, ave o2scale2 = 0.772" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "43 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:59:59 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:59:59 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 23:00:15 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 23:00:17 MDT" [1] "reading in recalculated plot titles" [1] "Removed 43 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 821 row(s) with high TFRIDGE" [1] "TEMP: 571 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 23:00:22 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 395 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.938 co2off = 392.74 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.89 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 93 102 0.06590741 0.07216681 0.06973253 2 12.240547 129.1087 3 2 103 112 0.07286233 0.07912164 0.07668757 2 -17.228883 281.0408 5 2 393 402 0.27463163 0.28089462 0.27845883 3 -17.190664 279.5829 6 4 403 412 0.28159005 0.28785272 0.28541800 3 12.295320 133.9131 8 3 422 431 0.29551042 0.30176962 0.30072627 3 2.430984 211.8900 10 4 504 513 0.48317321 0.48943634 0.48700165 2 12.267953 137.9665 11 2 514 523 0.49013194 0.49639479 0.49395940 2 -17.206930 278.0424 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.168282 1.294334 0.0007369506 -0.688981932 0.003578637 9.648199 3 1.168399 1.294529 -0.0004525378 -1.434802647 0.004705790 4.747827 5 1.169534 1.295573 -0.0005343275 -0.009439333 0.004991504 2.563715 6 1.169571 1.295610 0.0008474951 0.553458832 0.010118463 2.959980 8 1.169759 1.295828 -0.0019495744 -1.935027595 0.005549770 2.771334 10 1.168141 1.293810 -0.0007071019 1.470032651 0.002277302 15.001779 11 1.168189 1.293905 -0.0043771131 1.273930584 0.011210617 5.095241 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.747 co2l1 = 0.937 co2l0 = -0.005" [1] "co2l0 = -142.97 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 470 1-min values rejected as stack air" [1] "0 out of 470 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"