[1] "2025-04-29 22:59:20 MDT" [1] "1501" "150128" "d028" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150128a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86040 63 [1] 86040 [1] 86040 [1] "testing skipping spike filter" [1] 86040 [1] 86040 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:59:24 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.77" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "14 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.77" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "14 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:59:25 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:59:25 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:59:40 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:59:42 MDT" [1] "reading in recalculated plot titles" [1] "Removed 14 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1419 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:59:50 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 395 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.937 co2off = 387.25 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.96 minutes" [1] "Shortest Cal: 8.07 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 32 41 0.02252896 0.02879219 0.02635507 3 -17.134469 276.7589 3 4 42 51 0.02948843 0.03575136 0.03331499 3 12.351828 133.3879 4 5 52 61 0.03644676 0.04270992 0.04166407 NA 1.069750 192.7823 5 3 62 71 0.04340527 0.04966832 0.04862399 3 2.477312 210.8974 7 4 332 341 0.23132020 0.23758293 0.23514583 2 12.395078 132.3736 8 2 342 351 0.23827833 0.24454112 0.24210475 2 -17.080359 279.7645 10 2 631 640 0.44022341 0.44651730 0.44406502 3 -17.066187 277.3358 11 4 641 650 0.44721279 0.45347552 0.45103937 3 12.389336 134.9922 12 3 651 660 0.45418707 0.46045718 0.45941415 3 2.516648 216.1013 14 4 922 931 0.64886597 0.65514120 0.65270275 2 12.345258 130.8432 15 2 932 941 0.65585666 0.66212005 0.65968245 2 -17.147125 276.5210 16 5 942 951 0.66281508 0.66909329 0.66805017 NA 1.072813 196.1265 18 2 1217 1225 0.85815799 0.86376024 0.86166598 3 -17.248134 275.7383 19 4 1226 1235 0.86445573 0.87071832 0.86828194 3 12.230914 137.8761 20 3 1236 1245 0.87141369 0.87769734 0.87664861 3 2.360711 218.2664 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.170480 1.296544 -0.0009490729 0.09467444 0.002595927 4.541445 3 1.170477 1.296534 0.0037048939 0.14822988 0.009811889 1.893779 4 1.170521 1.296536 -0.0062165859 -1.94316014 0.004419417 2.982730 5 1.170770 1.296830 -0.0023516398 -0.59358170 0.006117707 2.031352 7 1.173722 1.300317 0.0011015330 1.35178774 0.003386348 5.678990 8 1.173850 1.300489 -0.0019160404 0.74139017 0.006798581 7.602318 10 1.175063 1.301667 0.0007964595 -1.38255208 0.003016880 5.134345 11 1.174696 1.301276 -0.0016770875 -1.07573894 0.005421306 6.015942 12 1.174801 1.301360 0.0006436017 -0.99287231 0.003294160 2.433306 14 1.172462 1.298797 -0.0006253801 0.87483751 0.002954158 3.973540 15 1.172332 1.298671 -0.0030380773 0.84883319 0.008361797 3.987397 16 1.171756 1.298037 -0.0043693562 0.37518965 0.003093592 1.792247 18 1.168527 1.294594 0.0003733235 2.09054003 0.003177359 4.785764 19 1.168329 1.294323 0.0002028548 -0.98307920 0.008130626 3.917011 20 1.168236 1.294217 0.0007308897 3.30728921 0.002785473 5.273728 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.679 co2l1 = 0.937 co2l0 = 0.004" [1] "co2l0 = -143.58 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "30 out of 50 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "20 out of 1213 1-min values rejected as stack air" [1] "20 out of 1213 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"