[1] "2025-04-29 22:58:49 MDT" [1] "1501" "150127" "d027" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150127a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:58:53 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.856, ave o2scale2 = 0.773" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "62 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.856, ave o2scale2 = 0.773" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "64 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:58:53 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:58:53 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:59:09 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:59:10 MDT" [1] "reading in recalculated plot titles" [1] "Removed 64 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 17 row(s) with high TFRIDGE" [1] "TEMP: 1355 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:59:15 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.7" [1] "position 2 cylinder CB08905 description: MS CO2 = 395 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.937 co2off = 386.95 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.38 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 250 259 0.1875201 0.1937801 0.1913454 3 -17.098586 283.1435 3 4 260 269 0.1944754 0.2007384 0.1983022 3 12.377391 139.8744 4 3 270 279 0.2014340 0.2076966 0.2066533 3 2.497508 207.7304 6 4 538 547 0.3962470 0.4025069 0.4000721 2 12.314687 135.0749 7 2 548 557 0.4032023 0.4094653 0.4070285 2 -17.168227 281.1073 8 5 558 567 0.4101609 0.4164236 0.4153802 NA 1.088625 192.7808 10 2 826 834 0.6057383 0.6113024 0.6092160 3 -17.194045 276.3390 11 4 835 844 0.6120020 0.6182656 0.6158282 3 12.281320 132.6534 12 3 845 852 0.6189610 0.6245289 0.6241811 3 2.407685 212.4728 14 4 1108 1114 0.8137627 0.8200261 0.8177991 2 12.312972 121.8213 15 2 1115 1119 0.8207214 0.8235069 0.8228090 2 -17.156188 282.2937 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.168971 1.294691 -2.355232e-04 -1.821894e+00 0.002593979 13.269289 3 1.168718 1.294401 2.831919e-03 1.698668e-01 0.007797861 11.767865 4 1.168492 1.294182 -9.186123e-04 -5.963888e-01 0.004073192 1.097100 6 1.166155 1.291650 2.546624e-03 1.475859e+00 0.007884985 4.615270 7 1.166161 1.291691 -2.945166e-03 1.255023e+00 0.008162683 3.597838 8 1.166027 1.291521 -5.740671e-03 -2.363615e+00 0.004065864 3.252330 10 1.166460 1.292190 -6.931637e-04 -1.374280e+00 0.002261174 4.519803 11 1.166466 1.292131 3.933404e-05 -7.416096e-01 0.005646135 5.266176 12 1.166801 1.292505 1.088528e-03 -1.956473e-14 0.003452775 0.000000 14 1.167820 1.293684 1.061862e-03 -1.534955e+00 0.003524919 4.992093 15 1.168254 1.293973 -6.686719e-03 -3.777632e+00 0.007393251 3.884581 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.698 co2l1 = 0.937 co2l0 = 0.005" [1] "co2l0 = -142.05 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "88 out of 265 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "177 out of 1209 1-min values rejected as stack air" [1] "177 out of 1209 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"