[1] "2025-04-29 22:57:20 MDT" [1] "1501" "150124" "d024" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150124a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 83618 63 [1] 83618 [1] 83618 [1] "testing skipping spike filter" [1] 83618 [1] 83618 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:57:24 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.847, ave o2scale2 = 0.765" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "63 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.847, ave o2scale2 = 0.765" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "62 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:57:24 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:57:24 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:57:33 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:57:35 MDT" [1] "reading in recalculated plot titles" [1] "Removed 62 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 4 row(s) with variable TFCELL" [1] "TEMP: 1324 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:57:38 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 395 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.938 co2off = 379.58 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.42 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 8 9 [4,] 10 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 164 173 0.1202836 0.1265434 0.1241092 3 -16.835352 276.7448 3 4 174 183 0.1272387 0.1335019 0.1310671 3 12.638336 130.4253 4 5 184 193 0.1341972 0.1404607 0.1394158 NA 1.396344 189.6625 5 3 194 203 0.1411563 0.1474190 0.1463748 3 2.766703 213.4924 7 2 315 319 0.2752694 0.2780510 0.2773555 2 -16.805271 271.5877 8 4 320 328 0.2794456 0.2850130 0.2829235 2 12.659464 129.7593 9 5 329 338 0.2857084 0.2919714 0.2909265 NA 1.082781 192.1713 11 4 599 608 0.4736100 0.4798737 0.4774394 2 12.693031 134.0241 12 2 609 618 0.4805691 0.4868322 0.4843980 2 -16.789406 281.4855 14 2 899 905 0.6823834 0.6865606 0.6851678 3 -16.787700 279.0112 15 4 906 915 0.6893424 0.6956053 0.6931698 3 12.665383 129.0740 16 3 916 923 0.6963009 0.7025639 0.7022161 3 2.792844 214.4973 18 4 1168 1177 0.8911492 0.8974159 0.8949818 2 12.675242 133.1129 19 2 1178 1187 0.8981112 0.9043713 0.9019370 2 -16.785063 276.9722 20 5 1188 1197 0.9050667 0.9113264 0.9102830 NA 1.664500 189.7102 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.176455 1.302865 -0.0014835065 -1.3886618 0.004175681 3.930222 3 1.176579 1.303009 0.0004209183 -3.2004589 0.006525015 14.449364 4 1.176699 1.303134 -0.0029324903 -0.7006998 0.002077126 1.503133 5 1.176920 1.303368 -0.0021433509 7.0900352 0.006333262 10.748544 7 1.178132 1.305216 -0.0022778493 -11.2602960 0.002340484 11.288791 8 1.178734 1.305702 -0.0007061064 7.1648141 0.001574891 21.472561 9 1.179212 1.306172 -0.0010611294 -6.5358182 0.000751301 10.397421 11 1.181458 1.308757 0.0002927328 1.3743272 0.004376020 7.496722 12 1.181637 1.308936 -0.0029199891 0.4224479 0.008759689 4.690032 14 1.183670 1.311213 0.0019691266 -3.6095679 0.003618907 7.676004 15 1.183185 1.310787 0.0003063426 3.6110007 0.003710121 12.245329 16 1.182896 1.310492 -0.0019401853 -5.3808341 0.005690418 3.810532 18 1.184211 1.311817 0.0002548454 -1.3652211 0.001090461 3.567967 19 1.184181 1.311789 -0.0012465819 0.7802386 0.005672714 2.755899 20 1.183842 1.311406 -0.0029951329 2.1890214 0.002121320 3.205401 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.371 co2l1 = 0.937 co2l0 = 0.007" [1] "co2l0 = -142.48 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "94 out of 165 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "71 out of 1118 1-min values rejected as stack air" [1] "71 out of 1118 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"