[1] "2025-04-29 22:56:45 MDT" [1] "1501" "150123" "d023" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150123a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:56:49 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.852, ave o2scale2 = 0.77" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "77 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.852, ave o2scale2 = 0.77" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "77 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:56:50 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:56:50 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:57:07 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:57:08 MDT" [1] "reading in recalculated plot titles" [1] "Removed 77 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1358 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:57:15 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 395 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.937 co2off = 397.78 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.94 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 97 103 0.07617940 0.08244213 0.08021511 2 12.563634 129.8579 3 2 104 113 0.08313773 0.08940049 0.08696610 2 -16.917859 279.2789 5 2 379 385 0.28490972 0.29117364 0.28936508 3 -16.851634 277.2989 6 4 386 395 0.29187124 0.29813189 0.29569772 3 12.634969 131.1975 7 3 396 405 0.29882731 0.30509028 0.30404689 3 2.759516 210.4937 9 4 660 669 0.49376832 0.50003125 0.49759660 2 12.631055 133.9249 10 2 670 679 0.50072865 0.50699398 0.50455648 2 -16.841555 280.6345 11 5 680 689 0.50769077 0.51395440 0.51291128 NA 1.364063 194.3650 15 2 959 968 0.70265286 0.70892240 0.70648443 3 -16.908867 279.0704 16 4 969 977 0.70961826 0.71519109 0.71310186 3 12.586911 135.3363 17 3 978 987 0.71658449 0.72284994 0.72180676 3 2.713469 215.4287 19 4 1235 1244 0.91153356 0.91779959 0.91536298 2 12.574133 130.2507 20 2 1245 1254 0.91849653 0.92475929 0.92232275 2 -16.909656 278.8070 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.170014 1.295456 -0.0020611565 0.06300791 0.006518766 3.563580 3 1.170318 1.295774 -0.0007766709 0.25856761 0.005725662 1.695447 5 1.174803 1.300943 -0.0002141187 -0.52128292 0.002512453 1.579864 6 1.174792 1.301001 0.0019064700 0.46804500 0.005552409 2.146395 7 1.174875 1.301108 -0.0006063516 -4.22159344 0.004407627 5.487047 9 1.174627 1.300730 0.0005212283 1.16522184 0.004853827 3.613093 10 1.174661 1.300761 -0.0013153981 -0.64542559 0.005525654 2.962653 11 1.174365 1.300428 -0.0071155126 0.21920368 0.005038136 1.839268 15 1.173426 1.299393 -0.0002919779 -0.73275969 0.004959708 2.752736 16 1.173391 1.299321 0.0059803073 -1.58926815 0.013711207 4.494253 17 1.173451 1.299448 -0.0004920329 -3.58373804 0.003925080 9.215476 19 1.173672 1.299665 0.0011813730 0.16775237 0.003543958 3.261269 20 1.173845 1.299855 -0.0020262556 0.26071495 0.006157440 3.633866 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.441 co2l1 = 0.936 co2l0 = 0.001" [1] "co2l0 = -142.4 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "41 out of 80 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "39 out of 1179 1-min values rejected as stack air" [1] "39 out of 1061 Line 1 1-min values rejected as stack air" [1] "0 out of 118 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"