[1] "2025-04-29 22:56:16 MDT" [1] "1501" "150122" "d022" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150122a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:56:20 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.856, ave o2scale2 = 0.773" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "38 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.856, ave o2scale2 = 0.773" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "38 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:56:21 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:56:21 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:56:34 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:56:35 MDT" [1] "reading in recalculated plot titles" [1] "Removed 39 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1397 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:56:40 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 395 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.937 co2off = 398.01 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.88 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [5,] 12 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 45 54 0.03222624 0.03848958 0.03605328 3 -16.857609 276.1322 3 4 55 64 0.03918513 0.04544792 0.04301275 3 12.643555 133.8839 4 3 65 73 0.04614343 0.05171079 0.05101540 3 2.766625 212.8214 8 4 343 352 0.24096765 0.24722758 0.24479282 2 12.640703 131.0536 9 2 353 362 0.24792303 0.25418174 0.25174792 2 -16.854430 276.4620 10 5 363 372 0.25487731 0.26114005 0.26009699 NA 1.354687 192.9507 12 2 643 652 0.44995897 0.45622193 0.45378538 3 -16.887227 283.4894 13 4 653 662 0.45691730 0.46318056 0.46074321 3 12.617688 130.1307 14 3 663 672 0.46387595 0.47013487 0.46909178 3 2.732984 209.1484 16 4 942 951 0.65872781 0.66499077 0.66255620 2 12.590211 133.4816 17 2 952 960 0.66568637 0.67125362 0.66916627 2 -16.904125 276.2655 19 2 1218 1227 0.86745955 0.87372885 0.87128646 3 -16.930750 280.2309 20 4 1228 1235 0.87442477 0.88068403 0.87894515 3 12.563313 134.0131 21 5 1236 1245 0.88137957 0.88764236 0.88659905 NA 1.277031 190.5205 22 3 1246 1255 0.88833796 0.89459766 0.89355460 3 2.680141 213.7651 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.168926 1.294204 -0.0008625706 -1.86831163 0.003041152 6.2921604 3 1.168765 1.294038 0.0024989087 -0.76496194 0.007722477 2.1567922 4 1.168933 1.294122 -0.0001501977 2.43979662 0.003916113 2.4431019 8 1.169125 1.294376 0.0006120342 0.25548402 0.003696003 1.7383091 9 1.169217 1.294496 -0.0010915703 -0.94360676 0.004774892 3.6669217 10 1.169206 1.294463 -0.0028710523 -5.72845562 0.002032932 7.5880711 12 1.168650 1.293874 -0.0002187312 -2.13537983 0.002952552 9.8422579 13 1.168467 1.293693 0.0018003583 -0.80201998 0.006678273 4.0461363 14 1.168355 1.293567 0.0001605180 -4.31265070 0.003028464 6.7841026 16 1.168008 1.293106 0.0014721697 1.92897390 0.005604918 6.4696926 17 1.168153 1.293228 -0.0021601240 0.66502149 0.005338539 4.3694105 19 1.167560 1.292661 -0.0014585465 -0.07159745 0.004889516 2.7761929 20 1.167929 1.293073 0.0002386545 0.73974182 0.006096233 3.6512882 21 1.167825 1.292972 -0.0030575315 0.06696914 0.002165515 1.2723132 22 1.168018 1.293168 -0.0003283188 -0.62521792 0.003421758 0.8252033 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.436 co2l1 = 0.936 co2l0 = 0.004" [1] "co2l0 = -142.62 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "114 out of 205 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "91 out of 1190 1-min values rejected as stack air" [1] "73 out of 1133 Line 1 1-min values rejected as stack air" [1] "18 out of 57 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"