[1] "2025-04-29 22:55:44 MDT" [1] "1501" "150121" "d021" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150121a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86040 63 [1] 86040 [1] 86040 [1] "testing skipping spike filter" [1] 86040 [1] 86040 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:55:48 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.855, ave o2scale2 = 0.772" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "21 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.855, ave o2scale2 = 0.772" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "21 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:55:48 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:55:48 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:56:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:56:06 MDT" [1] "reading in recalculated plot titles" [1] "Removed 21 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 187 row(s) with high TFRIDGE" [1] "TEMP: 1225 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:56:11 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 395 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.937 co2off = 406.06 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.1 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 2 4 [2,] 5 6 [3,] 7 9 [4,] 10 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 5 4 13 0.003243837 0.0095068 0.008463513 NA 1.486594 189.9394 4 2 278 287 0.198092188 0.2043510 0.201917014 3 -16.751188 281.3584 5 4 288 297 0.205050058 0.2113093 0.208875398 3 12.751859 134.1972 6 3 298 307 0.212004745 0.2182696 0.217224964 3 2.878859 208.8795 8 4 571 580 0.406839757 0.4130988 0.410664876 2 12.726500 133.3817 9 2 581 590 0.413794329 0.4200573 0.417623300 2 -16.761555 275.9669 11 2 867 875 0.614689815 0.6202542 0.618167700 3 -16.809714 275.1784 12 4 876 884 0.620950203 0.6265174 0.624430725 3 12.682464 128.8283 14 3 894 902 0.633475694 0.6390437 0.638348225 3 2.798482 208.2062 16 2 986 995 0.830469358 0.8367285 0.834294376 1 -16.778492 279.5310 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.171946 1.297633 -0.0021843145 -0.1798404 0.001546796 1.018686 4 1.170204 1.295550 -0.0016553331 0.2014635 0.004433411 1.206689 5 1.170220 1.295577 0.0035692074 -0.5596140 0.008908999 3.675171 6 1.170355 1.295725 -0.0010308963 -3.2008875 0.003024777 4.212157 8 1.170048 1.295373 0.0013640802 0.3603818 0.004557421 2.952115 9 1.170339 1.295711 -0.0023930141 -1.2102511 0.007780717 3.025564 11 1.169025 1.294175 -0.0009516161 -1.0831576 0.002498139 2.451464 12 1.168867 1.294083 0.0014285791 -2.3782733 0.003359505 6.845265 14 1.168949 1.294233 0.0005656161 -2.1310460 0.003248741 2.264374 16 1.169939 1.295261 -0.0035385840 0.1116864 0.009078000 1.569901 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.333 co2l1 = 0.936 co2l0 = 0.003" [1] "co2l0 = -142.57 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "152 out of 316 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "164 out of 1066 1-min values rejected as stack air" [1] "126 out of 993 Line 1 1-min values rejected as stack air" [1] "38 out of 73 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"