[1] "2025-04-29 22:55:12 MDT" [1] "1501" "150120" "d020" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150120a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:55:16 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.852, ave o2scale2 = 0.77" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "66 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.852, ave o2scale2 = 0.77" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "66 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:55:17 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:55:17 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:55:33 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:55:34 MDT" [1] "reading in recalculated plot titles" [1] "Removed 66 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1369 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:55:39 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 395 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.936 co2off = 380.98 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.56 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.07 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 189 198 0.1539109 0.1601701 0.1577361 2 12.853602 130.3245 3 2 199 208 0.1608692 0.1671285 0.1646945 2 -16.635922 276.3413 5 2 487 494 0.3640751 0.3689572 0.3672147 3 -16.610240 275.8859 6 4 495 504 0.3696528 0.3759120 0.3734778 3 12.880250 135.4974 7 5 505 514 0.3766077 0.3828709 0.3818278 NA 1.609969 191.9099 8 3 515 524 0.3835661 0.3898386 0.3887953 3 3.004195 214.3383 10 4 784 793 0.5716603 0.5779286 0.5754934 2 12.879008 131.5358 11 2 794 803 0.5786252 0.5849222 0.5824579 2 -16.605992 280.4448 14 2 1067 1076 0.7805393 0.7868021 0.7843653 3 -16.696836 275.3958 15 4 1077 1085 0.7874977 0.7937613 0.7911751 3 12.781583 130.6281 16 3 1086 1095 0.7944567 0.8007195 0.7996737 3 2.906500 223.6425 18 4 1354 1363 0.9893287 0.9955917 0.9931558 2 12.794156 128.7045 19 2 1364 1369 0.9962872 0.9997659 0.9987221 2 -16.702750 277.5191 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.172174 1.297992 9.265229e-04 0.4328315 0.002562595 4.8380941 3 1.172557 1.298398 -2.266208e-03 -0.8085397 0.006474430 5.6014713 5 1.175416 1.301526 2.182945e-03 -1.0070660 0.004296513 2.1130797 6 1.175450 1.301549 1.130593e-03 1.6690972 0.007841126 6.9162932 7 1.175475 1.301572 -1.934920e-03 1.8464305 0.001370019 2.7565132 8 1.175699 1.301800 -3.216449e-05 7.6964805 0.002197665 10.1125757 10 1.175357 1.301319 -7.389505e-04 -1.5583976 0.002607817 4.1699523 11 1.175400 1.301395 1.145215e-04 -0.8565688 0.005000160 7.8758594 14 1.173035 1.298659 -1.968508e-03 0.1178979 0.005746790 3.6924869 15 1.172884 1.298537 6.738371e-04 4.8840059 0.004402300 17.8341622 16 1.172965 1.298656 7.638364e-04 8.0128441 0.003505894 10.8790988 18 1.172287 1.298009 2.241623e-04 -1.4176630 0.001604611 3.6977648 19 1.172308 1.298030 -6.623151e-03 0.1738220 0.009022974 0.3478246 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.219 co2l1 = 0.936 co2l0 = 0.003" [1] "co2l0 = -142.5 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "39 out of 437 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "398 out of 1212 1-min values rejected as stack air" [1] "364 out of 1178 Line 1 1-min values rejected as stack air" [1] "34 out of 34 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"