[1] "2025-04-29 22:54:51 MDT" [1] "1501" "150119" "d019" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150119a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85311 63 [1] 85311 [1] 85311 [1] "testing skipping spike filter" [1] 85311 [1] 85311 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:54:55 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.848, ave o2scale2 = 0.766" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "184 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.848, ave o2scale2 = 0.766" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "184 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:54:56 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:54:56 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:55:03 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:55:04 MDT" [1] "reading in recalculated plot titles" [1] "Removed 184 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 67 row(s) with high TFRIDGE" [1] "Removed 3 row(s) with variable TFCELL" [1] "TEMP: 1165 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:55:07 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 395 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.942 co2off = 379.08 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.66 minutes" [1] "Shortest Cal: 6.01 minutes" [1] "Longest Cal: 9.05 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 6 [3,] 8 9 [4,] 10 11 [5,] 12 12 [6,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 31 40 0.02169980 0.02796380 0.02552866 3 -16.240664 278.8119 3 4 41 50 0.02866204 0.03492529 0.03248836 3 13.223383 130.4395 4 3 51 60 0.03562072 0.04188330 0.04084033 3 3.359594 209.7244 6 3 129 138 0.10991936 0.11617899 0.11513586 3 3.368375 194.2102 7 2 139 148 0.11687425 0.12313426 0.12069956 3 -16.233594 276.6155 8 4 149 158 0.12382969 0.13008970 0.12765460 3 13.224211 131.5098 9 5 159 168 0.13079771 0.13708166 0.13603807 NA 1.943344 190.5864 11 4 421 430 0.31865394 0.32491667 0.32248183 2 13.132625 127.1176 12 2 431 440 0.32561212 0.33187500 0.32944089 2 -16.354641 280.4280 14 2 717 723 0.52753012 0.53170275 0.53031209 2 -16.515387 286.4161 15 4 724 733 0.53448553 0.54074421 0.53831031 2 12.962570 129.9794 18 4 946 953 0.73632807 0.74258802 0.74015370 1 12.809844 129.3829 21 2 1090 1099 0.94512153 0.95138435 0.94894918 3 -16.679070 282.8603 22 4 1100 1109 0.95207986 0.95834320 0.95590856 3 12.814109 132.1483 23 3 1110 1119 0.95903854 0.96530385 0.96425911 3 2.942930 210.7312 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.196012 1.324047 6.158578e-04 0.5603079 0.0035974845 3.257505 3 1.195798 1.323837 1.108892e-03 -1.0805311 0.0062637739 4.485551 4 1.195752 1.323795 -2.690831e-04 -2.6812253 0.0031217841 3.828460 6 1.193625 1.321216 2.656490e-03 -8.9704893 0.0069705215 11.598033 7 1.193565 1.321183 -1.793176e-03 -1.4910094 0.0055446644 9.369733 8 1.193331 1.320893 1.884471e-03 -1.2766699 0.0052643233 5.973101 9 1.193130 1.320652 1.310480e-03 -5.5104069 0.0009280777 8.255271 11 1.186664 1.313567 -1.660752e-03 -0.4991464 0.0047638426 4.132608 12 1.186502 1.313437 -3.422271e-03 2.5118514 0.0090305626 10.090557 14 1.177651 1.303637 -4.930967e-04 -2.8951725 0.0023988930 9.400430 15 1.176820 1.302746 3.148231e-03 0.2509769 0.0085034419 12.170469 18 1.167579 1.292931 1.387261e-03 1.4000433 0.0049234373 6.186792 21 1.167799 1.293164 -1.902523e-03 -2.5014121 0.0047418207 8.983081 22 1.167600 1.292945 7.817979e-05 0.9313930 0.0049971811 3.991187 23 1.167668 1.293017 -8.457409e-04 2.0084405 0.0035134368 4.138681 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 392.036 co2l1 = 0.937 co2l0 = -0.003" [1] "co2l0 = -140.85 co2l1 = 0.211" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "62 out of 226 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "164 out of 931 1-min values rejected as stack air" [1] "164 out of 931 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"