[1] "2025-04-29 22:53:58 MDT" [1] "1501" "150116" "d016" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150116a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 59421 63 [1] 59421 [1] 59421 [1] "testing skipping spike filter" [1] 59421 [1] 59421 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:54:01 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.836, ave o2scale2 = 0.753" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "46 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.836, ave o2scale2 = 0.753" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "47 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:54:01 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:54:01 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:54:14 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:54:15 MDT" [1] "reading in recalculated plot titles" [1] "Removed 47 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 156 row(s) with high TFRIDGE" [1] "TEMP: 784 0 TRUE" [1] "Removed 294 row(s) with -999.99 for a Licor jog SD" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:54:17 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10019 description: WT2 CO2 = 407.52 O2 = -753.5" [1] "Nominal linear calibrations:" [1] "co2scl = 0.939 co2off = 391.69 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 104 113 0.09375472 0.1000238 0.09758378 2 13.480516 129.5281 3 2 114 123 0.10071921 0.1069791 0.10454455 2 -15.991727 274.7518 4 5 124 133 0.10767459 0.1139375 0.11289423 NA 2.376937 193.8728 6 2 390 399 0.30227080 0.3085337 0.30609672 3 -16.008211 274.0659 7 4 400 409 0.30922922 0.3154885 0.31305443 3 13.455594 131.9036 8 3 410 419 0.31618411 0.3224440 0.32140088 3 3.595086 212.5884 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.195698 1.327039 6.489963e-05 0.4535817 0.005049393 4.625981 3 1.195941 1.327298 -2.608035e-03 1.2014743 0.007241678 4.764951 4 1.195918 1.327265 -6.115063e-03 0.2813615 0.004331029 1.259965 6 1.196654 1.328059 -1.555927e-03 1.2257584 0.005040676 4.424989 7 1.196560 1.327957 1.703002e-03 -0.5419366 0.005399963 2.105811 8 1.196798 1.328232 2.690105e-03 0.2175206 0.006962907 1.144974 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 391.619 co2l1 = 0.937 co2l0 = -0.002" [1] "co2l0 = -142.79 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "15 out of 30 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "15 out of 398 1-min values rejected as stack air" [1] "15 out of 398 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"