[1] "2025-04-29 22:52:59 MDT" [1] "1501" "150114" "d014" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150114a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:53:03 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.762" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "67 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.762" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "69 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:53:04 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:53:04 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:53:15 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:53:16 MDT" [1] "reading in recalculated plot titles" [1] "Removed 69 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1367 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:53:20 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.2" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.937 co2off = 397.21 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.74 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.06 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 7 16 0.006505642 0.01276476 0.01033050 2 13.647758 136.9425 3 2 17 26 0.013460185 0.01971991 0.01728553 2 -15.835211 278.2818 5 2 299 308 0.215211256 0.22148116 0.21904345 3 -15.920445 279.4140 6 4 309 318 0.222176591 0.22843637 0.22600185 3 13.580445 129.0321 7 5 319 328 0.229131944 0.23539115 0.23434779 NA 2.416781 192.1511 8 3 329 338 0.236086603 0.24234991 0.24130689 3 3.685758 208.5612 10 4 595 603 0.423975000 0.43024155 0.42785496 2 13.471065 128.5124 11 2 604 613 0.430940972 0.43720370 0.43476830 2 -16.026547 280.7391 13 2 887 896 0.632708333 0.63896759 0.63653328 3 -16.046172 277.5849 14 4 897 906 0.639662876 0.64592992 0.64348910 3 13.435813 154.9193 15 3 907 916 0.646625318 0.65288440 0.65184126 3 3.553656 212.0710 17 4 1155 1162 0.841438166 0.84771852 0.84574113 2 13.357552 134.4500 18 2 1163 1172 0.848414063 0.85470602 0.85227170 2 -16.142789 276.9480 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.188855 1.319620 2.140323e-03 -4.3999819 0.005776573 13.644737 3 1.188812 1.319627 -2.222050e-03 -0.5638169 0.006272276 8.641770 5 1.185248 1.315525 -1.366703e-03 0.3513615 0.004560168 2.030468 6 1.184974 1.315251 1.291816e-03 1.3914677 0.004339581 12.110797 7 1.184839 1.315096 -2.308844e-03 -2.7659185 0.001635184 6.685416 8 1.184686 1.314893 -1.126957e-03 -4.4749296 0.003750660 6.055608 10 1.181515 1.311367 -8.973926e-06 -1.1176156 0.005254169 9.334396 11 1.181443 1.311125 -2.685462e-03 -2.4701251 0.006792669 10.681327 13 1.180287 1.310152 -1.078931e-03 1.6258341 0.004365519 5.248185 14 1.180233 1.309909 1.539585e-04 -1.7076255 0.008790849 22.753398 15 1.180246 1.309877 -2.830771e-03 2.7630602 0.007421163 3.984600 17 1.178120 1.307967 -1.634150e-03 1.9656403 0.004591673 6.141871 18 1.178083 1.307922 -4.688448e-03 -0.2396495 0.012200471 4.500181 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 391.604 co2l1 = 0.936 co2l0 = 0.009" [1] "co2l0 = -144.57 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "113 out of 380 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "267 out of 1182 1-min values rejected as stack air" [1] "267 out of 1182 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"