[1] "2025-04-29 22:51:43 MDT" [1] "1501" "150111" "d011" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150111a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 84182 63 [1] 84182 [1] 84182 [1] "testing skipping spike filter" [1] 84182 [1] 84182 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:51:47 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.762" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "40 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.762" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "42 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:51:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:51:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:51:55 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:51:56 MDT" [1] "reading in recalculated plot titles" [1] "Removed 42 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 235 row(s) with low FLSP" [1] "Removed 108 row(s) with high TFRIDGE" [1] "TEMP: 1016 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:51:59 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.937 co2off = 385.81 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.05 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.09 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 148 157 0.1054942 0.1117570 0.1093207 2 14.070836 129.1627 3 2 158 166 0.1124525 0.1187158 0.1161311 2 -15.447077 278.3644 5 2 447 456 0.3142003 0.3204597 0.3180253 3 -15.492898 276.2365 6 4 457 466 0.3211552 0.3274237 0.3249844 3 14.008313 131.0237 7 3 467 476 0.3281192 0.3343786 0.3333354 3 4.129070 213.2907 9 4 745 754 0.5230828 0.5293970 0.5269417 2 14.009516 133.6790 10 2 755 764 0.5300987 0.5364098 0.5339555 2 -15.498828 279.3492 11 5 765 774 0.5371117 0.5434248 0.5423717 NA 2.857437 193.7056 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.181239 1.310950 0.0012627169 -0.2051025 0.003433185 2.669141 3 1.181185 1.310945 -0.0034063891 -0.7048620 0.011826275 3.147366 5 1.182237 1.311913 -0.0022829505 0.8200603 0.006177430 3.430354 6 1.182103 1.311760 0.0024174016 -0.8350056 0.008451741 2.659039 7 1.182280 1.311962 -0.0007244631 0.7020920 0.003834384 1.424555 9 1.183214 1.312999 0.0005950420 0.4523675 0.002320029 1.698123 10 1.183279 1.313098 -0.0001312144 -0.9273076 0.006487862 3.686935 11 1.183296 1.313129 -0.0058079664 0.7749992 0.004154252 1.071318 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 391.112 co2l1 = 0.936 co2l0 = 0.002" [1] "co2l0 = -142.29 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "45 out of 115 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "70 out of 900 1-min values rejected as stack air" [1] "70 out of 900 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"