[1] "2025-04-29 22:51:06 MDT" [1] "1501" "150110" "d010" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150110a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:51:10 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.763" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "12 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.763" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "12 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:51:10 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:51:10 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:51:31 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:51:32 MDT" [1] "reading in recalculated plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 268 row(s) with high TFRIDGE" [1] "TEMP: 1156 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:51:38 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.938 co2off = 399.45 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.2 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 4 4 325 334 0.2707488 0.2770117 0.2745774 2 14.261156 132.4619 5 2 335 344 0.2777072 0.2839671 0.2815327 2 -15.258281 280.5263 6 5 345 354 0.2846624 0.2909216 0.2898785 NA 3.083281 193.9194 8 2 625 634 0.4794385 0.4856979 0.4832639 3 -15.335133 277.5969 9 4 635 644 0.4863935 0.4926530 0.4902190 3 14.186609 133.4477 10 3 645 654 0.4933484 0.4996079 0.4985644 3 4.292602 207.9531 12 2 1016 1025 0.8968245 0.9030837 0.9006497 3 -15.442922 281.5580 13 4 1026 1035 0.9037791 0.9100394 0.9076049 3 14.073281 134.8658 14 5 1036 1045 0.9107349 0.9169942 0.9159508 NA 2.899875 194.8919 15 3 1046 1054 0.9176898 0.9232568 0.9225602 3 4.186161 208.8993 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 4 1.183091 1.312824 -0.0017894115 -0.22469430 0.005566261 1.468605 5 1.183104 1.312843 -0.0030620535 -0.10957751 0.008222763 1.532212 6 1.182989 1.312710 -0.0033080892 1.33506715 0.002342291 1.779994 8 1.181274 1.310857 -0.0005208894 0.72832884 0.002203497 3.019439 9 1.181201 1.310777 0.0007845092 0.02570753 0.003440624 2.706852 10 1.181194 1.310786 -0.0004138484 -3.06595889 0.002288592 4.118515 12 1.180103 1.309643 -0.0006346013 -0.42270143 0.005384517 3.223480 13 1.180088 1.309610 0.0006182190 -0.40345665 0.006142831 4.098251 14 1.180194 1.309741 -0.0044928863 -1.53261454 0.003181981 2.144164 15 1.180217 1.309831 -0.0024100765 -1.59055919 0.005589454 1.655581 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 390.983 co2l1 = 0.935 co2l0 = 0.006" [1] "co2l0 = -142.57 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "22 out of 53 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "31 out of 1008 1-min values rejected as stack air" [1] "31 out of 1008 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"