[1] "2025-04-29 22:50:06 MDT" [1] "1501" "150108" "d008" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150108a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:50:10 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.836, ave o2scale2 = 0.753" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "53 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.836, ave o2scale2 = 0.753" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "55 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:50:11 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:50:11 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:50:22 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:50:23 MDT" [1] "reading in recalculated plot titles" [1] "Removed 55 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1381 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:50:30 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.6" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.936 co2off = 385.17 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 257 266 0.1835375 0.1897966 0.1873626 2 14.950570 130.9564 3 2 267 276 0.1904925 0.1967518 0.1943176 2 -14.563844 276.6779 5 2 557 566 0.3922124 0.3984721 0.3960377 3 -14.579031 280.2776 6 4 567 576 0.3991675 0.4054286 0.4029930 3 14.931305 132.6525 7 5 577 586 0.4061241 0.4123839 0.4113406 NA 3.762000 192.8265 8 3 587 596 0.4130793 0.4193391 0.4182957 3 5.045867 215.0886 10 4 826 835 0.6008819 0.6071408 0.6047067 2 14.865391 127.9257 11 2 836 844 0.6078368 0.6140960 0.6119101 2 -14.638132 279.8369 13 2 1110 1117 0.8096273 0.8158864 0.8134523 3 -14.697427 278.3015 14 4 1118 1127 0.8165817 0.8228414 0.8204070 3 14.808891 130.5102 15 3 1128 1137 0.8235370 0.8297998 0.8287565 3 4.921539 207.8616 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.195966 1.326890 -1.951589e-03 -0.05461292 0.006305772 1.574050 3 1.196158 1.327100 -3.503487e-03 -2.40280634 0.009169047 6.964245 5 1.198080 1.329313 -7.190928e-04 1.23552619 0.003716667 3.443788 6 1.197999 1.329235 3.168711e-03 -0.53069375 0.009022754 1.783336 7 1.198022 1.329261 -4.244694e-03 -3.15269888 0.003005204 4.213968 8 1.198064 1.329304 1.568082e-04 -0.63000879 0.002995241 1.036008 10 1.197255 1.328355 -7.102885e-04 -0.25006509 0.003024039 3.467789 11 1.197582 1.328786 -2.325429e-03 -0.51975852 0.005681069 3.765706 13 1.197766 1.328963 -2.484564e-05 -0.04928304 0.002413315 1.467321 14 1.197828 1.329028 1.271884e-03 0.28416423 0.004723345 1.623335 15 1.197817 1.329034 -1.059626e-03 -2.30678394 0.003303802 3.008573 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 390.308 co2l1 = 0.936 co2l0 = 0.004" [1] "co2l0 = -141.74 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "74 out of 130 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "56 out of 1242 1-min values rejected as stack air" [1] "56 out of 1242 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"