[1] "2025-04-29 22:49:36 MDT" [1] "1501" "150107" "d007" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150107a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85680 63 [1] 85680 [1] 85680 [1] "testing skipping spike filter" [1] 85680 [1] 85680 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:49:40 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.841, ave o2scale2 = 0.758" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "84 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.841, ave o2scale2 = 0.758" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "84 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:49:40 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:49:40 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:49:53 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:49:55 MDT" [1] "reading in recalculated plot titles" [1] "Removed 84 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 213 row(s) with high TFRIDGE" [1] "TEMP: 1129 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:50:01 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.936 co2off = 395.34 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.11 minutes" [1] "Average Cal: 9.08 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.13 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 167 176 0.1397685 0.1460321 0.1435959 3 -14.404930 278.8456 3 4 177 185 0.1467274 0.1529865 0.1509002 3 15.118694 134.2939 5 3 193 202 0.1606371 0.1668966 0.1658532 3 5.229438 214.4790 7 4 451 458 0.3484413 0.3547014 0.3529622 2 15.098573 134.1255 8 2 459 468 0.3553969 0.3616880 0.3592401 2 -14.430875 278.9248 10 2 732 741 0.5569236 0.5632528 0.5607910 3 -14.493641 279.7692 11 4 742 751 0.5639560 0.5702859 0.5678241 3 15.022133 133.7044 12 3 752 761 0.5709895 0.5773187 0.5762641 3 5.126492 212.5017 14 4 808 817 0.7658932 0.7722303 0.7697679 2 15.021531 125.6507 15 2 818 827 0.7729342 0.7792650 0.7768026 2 -14.505039 280.4541 16 5 828 837 0.7799688 0.7863022 0.7852471 NA 3.802750 192.0234 18 2 1094 1103 0.9750105 0.9813438 0.9788803 3 -14.546414 290.5049 19 4 1104 1113 0.9820475 0.9883802 0.9859176 3 14.971578 133.2640 20 3 1114 1123 0.9890840 0.9954167 0.9943616 3 5.077734 216.7757 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.186602 1.316455 -1.738636e-03 0.5527737 0.005585120 1.596134 3 1.186629 1.316457 3.013135e-03 -1.0359024 0.010171334 3.346261 5 1.186716 1.316610 -1.924155e-03 -2.7758841 0.006251161 4.439394 7 1.187309 1.317231 3.620613e-04 -1.5540804 0.002679032 3.298288 8 1.187346 1.317276 -2.785636e-04 -0.6780306 0.006078908 2.096396 10 1.188620 1.318764 -5.641389e-04 -0.6074759 0.001947913 2.435985 11 1.188611 1.318753 7.690725e-04 0.7247870 0.004596733 3.179631 12 1.188749 1.318924 -6.279974e-04 1.2611117 0.002142115 2.769930 14 1.190844 1.321184 -1.886929e-03 2.0518364 0.005631643 11.639621 15 1.191066 1.321432 -2.496411e-03 1.0717477 0.006777880 3.212016 16 1.191060 1.321438 -3.702332e-03 -0.9944930 0.002651650 2.764997 18 1.193815 1.324566 -7.583518e-04 5.4033014 0.003558023 16.287957 19 1.193755 1.324508 1.023597e-03 0.4670243 0.004349511 2.054776 20 1.193958 1.324735 1.436562e-05 -1.2172676 0.003787720 3.287500 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 390.168 co2l1 = 0.935 co2l0 = 0.007" [1] "co2l0 = -141.92 co2l1 = 0.214" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "65 out of 225 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "160 out of 932 1-min values rejected as stack air" [1] "160 out of 932 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"