[1] "2025-04-29 22:48:38 MDT" [1] "1501" "150104" "d004" Read 2 records [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150104a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 46080 63 [1] 46080 [1] 46080 [1] "testing skipping spike filter" [1] 46080 [1] 46080 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:48:40 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.837, ave o2scale2 = 0.754" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "2 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.837, ave o2scale2 = 0.754" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:48:41 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:48:41 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:48:44 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:48:45 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 461 manually filtered row(s) from a screenall period" [1] "Removed 3 row(s) with LiCO2A spikes in them" [1] "TEMP: 300 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:48:47 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.2" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.938 co2off = 402.04 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 7.44 minutes" [1] "Average Cal: 7.86 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.35 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 35 42 0.02503819 0.02991120 0.02816951 3 -14.630865 275.9204 3 4 43 50 0.03060648 0.03547908 0.03373779 3 14.844656 122.9993 4 3 51 58 0.03617439 0.04104262 0.04069489 3 4.963000 209.5985 6 4 283 287 0.23658128 0.24204563 0.24071094 2 14.765875 136.1110 7 2 288 293 0.24493012 0.25142254 0.24965616 2 -14.690563 278.0987 8 5 294 299 0.25238655 0.25857665 0.25933723 NA 3.679438 197.5250 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.197366 1.329272 -2.037656e-03 0.4794160 0.0043820330 4.608860 3 1.197220 1.329116 2.554930e-03 -1.5292234 0.0059298964 3.873966 4 1.197213 1.329094 1.640317e-04 4.6301319 0.0011612224 3.278772 6 1.194775 1.326015 5.078614e-05 0.7285598 0.0001082532 2.971667 7 1.194772 1.326119 -4.557938e-04 -0.4778379 0.0015728822 3.331521 8 1.194487 1.325757 6.088908e-02 10.4674046 0.0943103669 16.212837 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 390.367 co2l1 = 0.937 co2l0 = 0.01" [1] "co2l0 = -141.88 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "10 out of 15 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "5 out of 246 1-min values rejected as stack air" [1] "5 out of 246 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"