[1] "2025-04-29 22:48:11 MDT" [1] "1501" "150103" "d003" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150103a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 77580 63 [1] 77580 [1] 77580 [1] "testing skipping spike filter" [1] 77580 [1] 77580 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:48:14 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.83, ave o2scale2 = 0.748" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "24 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.83, ave o2scale2 = 0.748" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "23 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:48:15 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:48:15 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:48:29 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:48:30 MDT" [1] "reading in recalculated plot titles" [1] "Removed 24 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 9 row(s) with LiCO2A spikes in them" [1] "TEMP: 1259 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:48:33 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.938 co2off = 390.15 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.27 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 268 277 0.1928929 0.1991519 0.1967179 3 -14.309586 277.8032 4 4 278 287 0.1998474 0.2061069 0.2036729 3 15.157461 126.3142 5 3 288 295 0.2068023 0.2130625 0.2127147 3 5.304667 210.4492 7 4 556 565 0.4015868 0.4078498 0.4054134 2 15.170711 126.8240 8 2 566 575 0.4085451 0.4148081 0.4123714 2 -14.309727 275.0285 10 2 856 865 0.6102882 0.6165510 0.6141150 3 -14.441063 272.3904 11 4 866 875 0.6172465 0.6235061 0.6210718 3 15.024484 128.6019 12 5 876 885 0.6242014 0.6304610 0.6294175 NA 3.843500 189.8892 13 3 886 895 0.6311563 0.6374191 0.6363743 3 5.145984 201.0682 15 4 1087 1092 0.8182269 0.8231413 0.8216564 2 14.950016 126.7624 16 2 1093 1098 0.8241584 0.8290644 0.8276020 2 -14.532891 277.3691 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.206111 1.338450 -0.0016174614 -1.43371733 0.004241580 4.385860 4 1.206075 1.338402 0.0011404948 -1.17194770 0.006255706 4.551898 5 1.206872 1.339289 0.0024426787 6.33013566 0.004744679 4.482982 7 1.208234 1.341086 -0.0005710870 1.45650390 0.002583632 4.299607 8 1.208168 1.341010 -0.0034124414 0.76532352 0.008892082 2.999121 10 1.204163 1.336554 -0.0013464780 -0.01012992 0.003805541 2.776135 11 1.204053 1.336420 0.0036340984 0.08052597 0.010148603 2.496480 12 1.204053 1.336387 -0.0054885655 -0.92164570 0.003889087 1.342699 13 1.203909 1.336238 -0.0024778791 1.04811847 0.006528932 1.736996 15 1.201082 1.332986 -0.0007577552 -0.04351051 0.001495109 4.340435 16 1.201078 1.333022 -0.0016608065 3.77845787 0.003545969 7.091039 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 390.116 co2l1 = 0.937 co2l0 = 0" [1] "co2l0 = -140.9 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "137 out of 259 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "122 out of 1104 1-min values rejected as stack air" [1] "122 out of 1104 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"