[1] "2025-04-29 22:47:40 MDT" [1] "1501" "150102" "d002" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150102a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:47:44 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.824, ave o2scale2 = 0.742" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "39 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.824, ave o2scale2 = 0.742" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "39 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:47:44 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:47:44 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:48:00 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:48:01 MDT" [1] "reading in recalculated plot titles" [1] "Removed 39 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1396 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:48:05 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.939 co2off = 389.88 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.52 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 213 222 0.1492704 0.1555298 0.1530956 2 15.421781 134.6696 3 2 223 232 0.1562252 0.1624923 0.1600513 2 -14.027938 268.3363 5 2 513 522 0.3580000 0.3642597 0.3618253 3 -14.063711 270.6159 6 4 523 532 0.3649550 0.3712228 0.3687887 3 15.385188 130.4635 8 3 542 551 0.3788854 0.3851447 0.3841018 3 5.506102 209.1388 10 4 810 819 0.5667325 0.5729954 0.5705581 2 15.342086 131.2026 11 2 820 829 0.5736909 0.5799513 0.5775159 2 -14.111773 276.7187 13 2 1110 1119 0.7754711 0.7817304 0.7792962 3 -14.124375 274.9107 14 4 1120 1129 0.7824260 0.7886859 0.7862517 3 15.324422 133.1218 15 3 1130 1139 0.7893813 0.7956412 0.7945978 3 5.440578 221.3653 17 4 1374 1383 0.9841570 0.9904173 0.9879823 2 15.228570 134.0760 18 2 1384 1393 0.9911158 0.9973751 0.9949408 2 -14.223328 265.2850 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.216760 1.350581 1.124775e-03 1.85624109 0.003190562 7.238637 3 1.216699 1.350656 -5.076461e-03 -2.61871082 0.012700271 12.367153 5 1.216363 1.350045 1.119654e-03 -0.97806699 0.003621602 6.162492 6 1.216296 1.349933 1.154470e-03 1.14586069 0.003752826 4.195836 8 1.216306 1.349897 -3.767675e-04 -5.54422291 0.004845024 8.529894 10 1.214433 1.347965 1.564392e-03 -0.45377779 0.003996642 4.915776 11 1.214382 1.347912 -2.109932e-03 -1.58007237 0.008707226 5.452509 13 1.211050 1.344026 -3.636031e-03 -1.14281506 0.010203783 4.978572 14 1.210509 1.343331 1.817054e-03 0.06556911 0.005159807 2.462625 15 1.210338 1.343177 -4.060328e-03 -6.96570983 0.010369553 10.013644 17 1.207147 1.339576 4.086655e-05 3.30130172 0.001318836 23.665698 18 1.207234 1.339683 -1.603339e-03 4.09938368 0.005117454 12.828431 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 389.859 co2l1 = 0.937 co2l0 = 0.016" [1] "co2l0 = -144.37 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "62 out of 122 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "60 out of 1232 1-min values rejected as stack air" [1] "60 out of 1232 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"