[1] "2025-04-29 22:47:08 MDT" [1] "1501" "150101" "d001" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/150101a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:47:12 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.818, ave o2scale2 = 0.737" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "1 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.818, ave o2scale2 = 0.737" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "1 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:47:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:47:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:47:26 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:47:28 MDT" [1] "reading in recalculated plot titles" [1] "Removed 1 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1435 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:47:34 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.941 co2off = 389.52 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.95 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 151 160 0.1057172 0.1119804 0.1095441 3 -13.309492 270.7066 3 4 161 170 0.1126759 0.1189353 0.1165009 3 16.123695 127.9700 4 5 171 180 0.1196308 0.1258900 0.1248468 NA 5.278906 195.9787 5 3 181 190 0.1265856 0.1328449 0.1318018 3 6.250070 202.7033 7 4 451 460 0.3144030 0.3206627 0.3182285 2 15.917734 136.0244 8 2 461 470 0.3213579 0.3276173 0.3251832 2 -13.528484 271.6884 10 2 751 760 0.5231516 0.5294144 0.5269799 3 -13.681813 276.7900 11 4 761 770 0.5301100 0.5363727 0.5339377 3 15.745453 132.4142 12 3 771 779 0.5377638 0.5433310 0.5426354 3 5.879420 212.8329 14 4 1050 1059 0.7318435 0.7381101 0.7356762 2 15.582992 131.7320 15 2 1060 1069 0.7388057 0.7450653 0.7426313 2 -13.871477 275.8171 16 5 1070 1079 0.7457606 0.7520206 0.7509774 NA 4.448688 190.0362 18 2 1350 1359 0.9405824 0.9468461 0.9444093 3 -13.986633 272.7671 19 4 1360 1369 0.9475417 0.9538009 0.9513666 3 15.453047 126.1153 20 3 1370 1379 0.9544966 0.9607559 0.9597125 3 5.590344 210.4871 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.226239 1.360049 -0.0022839384 1.7149206 0.006245931 7.974414 3 1.226084 1.359952 0.0003706532 -0.7309555 0.005787286 3.678401 4 1.226149 1.359985 -0.0010607321 -1.8801220 0.000751301 4.189573 5 1.226176 1.360094 -0.0014791771 5.3676894 0.003941316 16.021305 7 1.224336 1.358521 -0.0007667180 -3.6017337 0.004093733 16.874215 8 1.224412 1.358560 -0.0020223607 -1.1728482 0.008661269 5.111678 10 1.222877 1.356917 -0.0018112100 1.2429618 0.005103177 6.001466 11 1.222756 1.356766 0.0027626077 1.0883895 0.007981896 5.266267 12 1.222701 1.356841 0.0003856537 -0.4654785 0.001434650 2.966806 14 1.220160 1.353721 0.0002460054 0.7768274 0.002543689 3.615012 15 1.220219 1.353768 -0.0034539353 -1.2283648 0.009915600 6.184183 16 1.219918 1.353484 -0.0018725033 1.5877299 0.001325825 2.312743 18 1.217796 1.351433 -0.0013318729 -0.5238842 0.004056030 5.607758 19 1.217712 1.351331 0.0028469492 1.4734063 0.008214531 4.066278 20 1.217648 1.351310 -0.0020845903 -2.0796383 0.005963992 4.211452 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 389.456 co2l1 = 0.938 co2l0 = 0.005" [1] "co2l0 = -142.97 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "25 out of 59 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "34 out of 1229 1-min values rejected as stack air" [1] "34 out of 1229 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"