[1] "2017-04-06 18:03:08 MDT"
[1] "1501"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1501/141230.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1501/141231.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1501/150101.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1501/150102.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1501/150103.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1501/150104.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1501/150105.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1501/150106.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1501/150107.html"  
[10] "/net/www/docs/homes/stephens/GO2/1501/150108.html"  
[11] "/net/www/docs/homes/stephens/GO2/1501/150109.html"  
[12] "/net/www/docs/homes/stephens/GO2/1501/150110.html"  
[13] "/net/www/docs/homes/stephens/GO2/1501/150111.html"  
[14] "/net/www/docs/homes/stephens/GO2/1501/150112.html"  
[15] "/net/www/docs/homes/stephens/GO2/1501/150113.html"  
[16] "/net/www/docs/homes/stephens/GO2/1501/150114.html"  
[17] "/net/www/docs/homes/stephens/GO2/1501/150115.html"  
[18] "/net/www/docs/homes/stephens/GO2/1501/150116.html"  
[19] "/net/www/docs/homes/stephens/GO2/1501/150117.html"  
[20] "/net/www/docs/homes/stephens/GO2/1501/150118.html"  
[21] "/net/www/docs/homes/stephens/GO2/1501/150119.html"  
[22] "/net/www/docs/homes/stephens/GO2/1501/150120.html"  
[23] "/net/www/docs/homes/stephens/GO2/1501/150121.html"  
[24] "/net/www/docs/homes/stephens/GO2/1501/150122.html"  
[25] "/net/www/docs/homes/stephens/GO2/1501/150123.html"  
[26] "/net/www/docs/homes/stephens/GO2/1501/150124.html"  
[27] "/net/www/docs/homes/stephens/GO2/1501/150125.html"  
[28] "/net/www/docs/homes/stephens/GO2/1501/150126.html"  
[29] "/net/www/docs/homes/stephens/GO2/1501/150127.html"  
[30] "/net/www/docs/homes/stephens/GO2/1501/150128.html"  
[31] "/net/www/docs/homes/stephens/GO2/1501/150129.html"  
[32] "/net/www/docs/homes/stephens/GO2/1501/150130.html"  
[33] "/net/www/docs/homes/stephens/GO2/1501/150131.html"  
[34] "/net/www/docs/homes/stephens/GO2/1501/150201.html"  
[35] "/net/www/docs/homes/stephens/GO2/1501/150202.html"  
[36] "/net/www/docs/homes/stephens/GO2/1501/150203.html"  
[37] "/net/www/docs/homes/stephens/GO2/1501/150204.html"  
[38] "/net/www/docs/homes/stephens/GO2/1501/150205.html"  
[39] "/net/www/docs/homes/stephens/GO2/1501/150206.html"  
[40] "/net/www/docs/homes/stephens/GO2/1501/150207.html"  
[41] "/net/www/docs/homes/stephens/GO2/1501/lmg_1501.html"
 [1] "/net/www/docs/homes/stephens/GO2/1501/141230.html"
 [2] "/net/www/docs/homes/stephens/GO2/1501/141231.html"
 [3] "/net/www/docs/homes/stephens/GO2/1501/150101.html"
 [4] "/net/www/docs/homes/stephens/GO2/1501/150102.html"
 [5] "/net/www/docs/homes/stephens/GO2/1501/150103.html"
 [6] "/net/www/docs/homes/stephens/GO2/1501/150104.html"
 [7] "/net/www/docs/homes/stephens/GO2/1501/150105.html"
 [8] "/net/www/docs/homes/stephens/GO2/1501/150106.html"
 [9] "/net/www/docs/homes/stephens/GO2/1501/150107.html"
[10] "/net/www/docs/homes/stephens/GO2/1501/150108.html"
[11] "/net/www/docs/homes/stephens/GO2/1501/150109.html"
[12] "/net/www/docs/homes/stephens/GO2/1501/150110.html"
[13] "/net/www/docs/homes/stephens/GO2/1501/150111.html"
[14] "/net/www/docs/homes/stephens/GO2/1501/150112.html"
[15] "/net/www/docs/homes/stephens/GO2/1501/150113.html"
[16] "/net/www/docs/homes/stephens/GO2/1501/150114.html"
[17] "/net/www/docs/homes/stephens/GO2/1501/150115.html"
[18] "/net/www/docs/homes/stephens/GO2/1501/150116.html"
[19] "/net/www/docs/homes/stephens/GO2/1501/150117.html"
[20] "/net/www/docs/homes/stephens/GO2/1501/150118.html"
[21] "/net/www/docs/homes/stephens/GO2/1501/150119.html"
[22] "/net/www/docs/homes/stephens/GO2/1501/150120.html"
[23] "/net/www/docs/homes/stephens/GO2/1501/150121.html"
[24] "/net/www/docs/homes/stephens/GO2/1501/150122.html"
[25] "/net/www/docs/homes/stephens/GO2/1501/150123.html"
[26] "/net/www/docs/homes/stephens/GO2/1501/150124.html"
[27] "/net/www/docs/homes/stephens/GO2/1501/150125.html"
[28] "/net/www/docs/homes/stephens/GO2/1501/150126.html"
[29] "/net/www/docs/homes/stephens/GO2/1501/150127.html"
[30] "/net/www/docs/homes/stephens/GO2/1501/150128.html"
[31] "/net/www/docs/homes/stephens/GO2/1501/150129.html"
[32] "/net/www/docs/homes/stephens/GO2/1501/150130.html"
[33] "/net/www/docs/homes/stephens/GO2/1501/150131.html"
[34] "/net/www/docs/homes/stephens/GO2/1501/150201.html"
[35] "/net/www/docs/homes/stephens/GO2/1501/150202.html"
[36] "/net/www/docs/homes/stephens/GO2/1501/150203.html"
[37] "/net/www/docs/homes/stephens/GO2/1501/150204.html"
[38] "/net/www/docs/homes/stephens/GO2/1501/150205.html"
[39] "/net/www/docs/homes/stephens/GO2/1501/150206.html"
[40] "/net/www/docs/homes/stephens/GO2/1501/150207.html"
[1] "141230" "150207"
 [1] "141230" "141231" "150101" "150102" "150103" "150104" "150105" "150106"
 [9] "150107" "150108" "150109" "150110" "150111" "150112" "150113" "150114"
[17] "150115" "150116" "150117" "150118" "150119" "150120" "150121" "150122"
[25] "150123" "150124" "150125" "150126" "150127" "150128" "150129" "150130"
[33] "150131" "150201" "150202" "150203" "150204" "150205" "150206" "150207"
[1] "000000" "999999"
[1] "141230_mr_proc.txt, 141230_cal_periods.txt, 141230_cal_param.txt,605jogs"
[1] "141231_mr_proc.txt, 141231_cal_periods.txt, 141231_cal_param.txt,1429jogs"
[1] "150101_mr_proc.txt, 150101_cal_periods.txt, 150101_cal_param.txt,1435jogs"
[1] "150102_mr_proc.txt, 150102_cal_periods.txt, 150102_cal_param.txt,1396jogs"
[1] "150103_mr_proc.txt, 150103_cal_periods.txt, 150103_cal_param.txt,1259jogs"
[1] "150104_mr_proc.txt, 150104_cal_periods.txt, 150104_cal_param.txt,300jogs"
[1] "150105_mr_proc.txt, 150105_cal_periods.txt, 150105_cal_param.txt,23jogs"
[1] "150106_mr_proc.txt, 150106_cal_periods.txt, 150106_cal_param.txt,1346jogs"
[1] "150107_mr_proc.txt, 150107_cal_periods.txt, 150107_cal_param.txt,1129jogs"
[1] "150108_mr_proc.txt, 150108_cal_periods.txt, 150108_cal_param.txt,1381jogs"
[1] "150109_mr_proc.txt, 150109_cal_periods.txt, 150109_cal_param.txt,1179jogs"
[1] "150110_mr_proc.txt, 150110_cal_periods.txt, 150110_cal_param.txt,1156jogs"
[1] "150111_mr_proc.txt, 150111_cal_periods.txt, 150111_cal_param.txt,1016jogs"
[1] "150112_mr_proc.txt, 150112_cal_periods.txt, 150112_cal_param.txt,156jogs"
[1] "150113_mr_proc.txt, 150113_cal_periods.txt, 150113_cal_param.txt,1275jogs"
[1] "150114_mr_proc.txt, 150114_cal_periods.txt, 150114_cal_param.txt,1367jogs"
[1] "150115_mr_proc.txt, 150115_cal_periods.txt, 150115_cal_param.txt,1341jogs"
[1] "150116_mr_proc.txt, 150116_cal_periods.txt, 150116_cal_param.txt,490jogs"
[1] "Output file empty for 150117"
[1] "150118_mr_proc.txt, 150118_cal_periods.txt, 150118_cal_param.txt,538jogs"
[1] "150119_mr_proc.txt, 150119_cal_periods.txt, 150119_cal_param.txt,1165jogs"
[1] "150120_mr_proc.txt, 150120_cal_periods.txt, 150120_cal_param.txt,1369jogs"
[1] "150121_mr_proc.txt, 150121_cal_periods.txt, 150121_cal_param.txt,1225jogs"
[1] "150122_mr_proc.txt, 150122_cal_periods.txt, 150122_cal_param.txt,1397jogs"
[1] "150123_mr_proc.txt, 150123_cal_periods.txt, 150123_cal_param.txt,1358jogs"
[1] "150124_mr_proc.txt, 150124_cal_periods.txt, 150124_cal_param.txt,1324jogs"
[1] "150125_mr_proc.txt, 150125_cal_periods.txt, 150125_cal_param.txt,1323jogs"
[1] "150126_mr_proc.txt, 150126_cal_periods.txt, 150126_cal_param.txt,1416jogs"
[1] "150127_mr_proc.txt, 150127_cal_periods.txt, 150127_cal_param.txt,1355jogs"
[1] "150128_mr_proc.txt, 150128_cal_periods.txt, 150128_cal_param.txt,1419jogs"
[1] "150129_mr_proc.txt, 150129_cal_periods.txt, 150129_cal_param.txt,571jogs"
[1] "150130_mr_proc.txt, 150130_cal_periods.txt, 150130_cal_param.txt,1351jogs"
[1] "150131_mr_proc.txt, 150131_cal_periods.txt, 150131_cal_param.txt,1379jogs"
[1] "150201_mr_proc.txt, 150201_cal_periods.txt, 150201_cal_param.txt,1396jogs"
[1] "150202_mr_proc.txt, 150202_cal_periods.txt, 150202_cal_param.txt,1400jogs"
[1] "150203_mr_proc.txt, 150203_cal_periods.txt, 150203_cal_param.txt,1362jogs"
[1] "150204_mr_proc.txt, 150204_cal_periods.txt, 150204_cal_param.txt,1334jogs"
[1] "150205_mr_proc.txt, 150205_cal_periods.txt, 150205_cal_param.txt,1328jogs"
[1] "150206_mr_proc.txt, 150206_cal_periods.txt, 150206_cal_param.txt,1388jogs"
[1] "150207_mr_proc.txt, 150207_cal_periods.txt, 150207_cal_param.txt,1138jogs"
[1] "141230" "150207" "d364"   "d038"  
[1] "Calculating derived concentration values"
[1] "2017-04-06 18:05:53 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.843, ave o2scale2 = 0.76"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 18:06:41 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 18:07:41 MDT"
[1] "2017-04-06 18:07:54 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 376.46 O2 = -483.5"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.8 O2 = -548.2"
[1] "position 3 cylinder CC339490 description: LS CO2 = 404.04 O2 = -642.9"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.91 O2 = -579.2"
[1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1501 Valve transient for  Line 1 after Line 2 = -0.78 , -0.68 , -0.47 , -0.39 , -0.31 n = 3"
[1] "1501 Valve transient for  Line 1 after Cal = -0.44 , -0.31 , -0.06 , -0.01 , -0.01 n = 146"
[1] "1501 Valve transient for  Line 2 after Line 1 = 8.54 , 6.1 , 1.91 , 0.07 , -0.03 n = 2"
[1] "1501 Valve transient for  Line 2 after Cal = 0.08 , 0.09 , 0.1 , 0.1 , 0.11 n = 2"
[1] "1501 Valve transient for  Line 1 after HS = -1.39 , -0.71 , -0.01 , -0.01 , -0.01 n = 50"
[1] "1501 Valve transient for  Line 1 after MS = -0.05 , -0.04 , -0.01 , -0.01 , -0.01 n = 66"
[1] "1501 Valve transient for  Line 1 after LT = -1.44 , -1.03 , -0.37 , -0.04 , -0.01 n = 30"
[1] "1501 Valve transient for  Line 2 after HS = -3.78 , -1.38 , 2.28 , 3.36 , 1.84 n = 1"
[1] "1501 Valve transient for  Line 2 after MS = 0.08 , 0.09 , 0.1 , 0.1 , 0.11 n = 2"
[1] "1501 Valve transient for  HS after Line 1 = 0.95 , 0.48 , 0.01 , 0 , 0 n = 55"
[1] "1501 Valve transient for  HS after Line 2 = 0.98 , 0.48 , -0.01 , -0.01 , -0.01 n = 1"
[1] "1501 Valve transient for  HS after MS = 2.85 , 1.43 , 0.01 , 0 , 0 n = 2"
[1] "1501 Valve transient for  HS after LS = 4.27 , 2.15 , 0.02 , 0.01 , 0 n = 61"
[1] "1501 Valve transient for  MS after Line 1 = -0.31 , -0.16 , -0.01 , -0.01 , 0 n = 2"
[1] "1501 Valve transient for  MS after LS = 1.42 , 0.72 , 0 , 0 , 0 n = 39"
[1] "1501 Valve transient for  MS after LT = 0.85 , 0.43 , 0 , 0 , 0 n = 20"
[1] "1501 Valve transient for  LS after Line 1 = -1.3 , -0.65 , 0 , 0 , 0 n = 61"
[1] "1501 Valve transient for  LS after Line 2 = -1.31 , -0.66 , -0.01 , 0 , 0 n = 1"
[1] "1501 Valve transient for  LS after HS = -4.28 , -2.15 , -0.02 , 0 , 0 n = 69"
[1] "1501 Valve transient for  LT after HS = -1.34 , -0.63 , 0.06 , 0.05 , 0.04 n = 20"
[1] "1501 Valve transient for  LT after LS = 0.7 , 0.39 , 0.06 , 0.05 , 0.04 n = 19"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "758 out of 7200 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "6442 out of 38693 1-min values rejected as stack air"
[1] "6304 out of 38157 Line 1 1-min values rejected as stack air"
[1] "138 out of 536 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1501loxy.d001"
[1] "LMG1501loxy.d002"
[1] "LMG1501loxy.d003"
[1] "LMG1501loxy.d005"
[1] "LMG1501loxy.d006"
[1] "LMG1501loxy.d007"
[1] "LMG1501loxy.d008"
[1] "LMG1501loxy.d009"
[1] "LMG1501loxy.d010"
[1] "LMG1501loxy.d011"
[1] "LMG1501loxy.d012"
[1] "LMG1501loxy.d013"
[1] "LMG1501loxy.d014"
[1] "LMG1501loxy.d015"
[1] "LMG1501loxy.d016"
[1] "LMG1501loxy.d017"
[1] "LMG1501loxy.d018"
[1] "LMG1501loxy.d019"
[1] "LMG1501loxy.d020"
[1] "LMG1501loxy.d021"
[1] "LMG1501loxy.d022"
[1] "LMG1501loxy.d023"
[1] "LMG1501loxy.d024"
[1] "LMG1501loxy.d025"
[1] "LMG1501loxy.d026"
[1] "LMG1501loxy.d027"
[1] "LMG1501loxy.d028"
[1] "LMG1501loxy.d029"
[1] "LMG1501loxy.d030"
[1] "LMG1501loxy.d031"
[1] "LMG1501loxy.d032"
[1] "LMG1501loxy.d033"
[1] "LMG1501loxy.d034"
[1] "LMG1501loxy.d035"
[1] "LMG1501loxy.d036"
[1] "LMG1501loxy.d037"
[1] "LMG1501loxy.d038"
[1] "LMG1501loxy.d364"
[1] "LMG1501loxy.d365"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1] [,2]
 [1,]  97.5  0.4
 [2,] 107.5  0.4
 [3,] 117.5  0.4
 [4,] 122.5  0.4
 [5,] 142.5  0.8
 [6,] 147.5  0.8
 [7,] 152.5  0.8
 [8,] 157.5  0.8
 [9,] 162.5  0.8
[10,] 167.5  0.8
[11,] 172.5  1.6
[12,] 177.5  0.8
[13,] 182.5  0.4
[14,] 187.5  0.8
[15,] 192.5  0.4
[16,] 197.5  0.4
[17,] 207.5  1.2
[18,] 212.5  0.4
[19,] 217.5  0.8
[20,] 227.5  0.4
[21,] 232.5  0.4
[22,] 237.5  0.8
[23,] 242.5  0.8
[24,] 247.5  0.4
[25,] 257.5  1.2
[26,] 262.5  2.0
[27,] 267.5  1.2
[28,] 277.5  2.0
[29,] 282.5  0.8
[30,] 287.5  2.0
[31,] 292.5  0.8
[32,] 297.5  1.2
[33,] 302.5  2.0
[34,] 307.5  4.4
[35,] 312.5  2.8
[36,] 317.5  4.4
[37,] 322.5  2.0
[38,] 327.5  2.0
[39,] 332.5  2.4
[40,] 337.5  2.4
[41,] 342.5  2.0
[42,] 347.5  1.2
[43,] 352.5  0.4
[44,] 357.5  0.4
[45,] 362.5  0.4
[46,] 367.5  0.4
[47,] 387.5  0.4
[48,] 397.5  0.4
[49,] 407.5  0.4
[50,] 412.5  0.0
[51,] 417.5  1.2
[52,] 427.5  0.4
[53,] 432.5  0.4
[54,] 437.5  0.4
[55,] 442.5  0.4
[56,] 447.5  0.4
       [,1] [,2]
 [1,] 212.5  0.4
 [2,] 217.5  0.8
 [3,] 222.5  2.0
 [4,] 227.5  6.4
 [5,] 232.5  5.2
 [6,] 237.5  4.0
 [7,] 242.5  2.0
 [8,] 247.5  0.4
 [9,] 252.5  0.4
[10,] 257.5  1.6
[11,] 262.5  0.8
[12,] 267.5  3.6
[13,] 272.5  2.0
[14,] 277.5  0.8
[15,] 282.5  0.4
[16,] 307.5  0.4
[17,] 392.5  0.4
[18,] 442.5  0.4
      [,1] [,2]
[1,] 112.5  0.4
[2,] 217.5  0.8
[3,] 222.5  2.4
[4,] 227.5  3.6
[5,] 232.5  0.4
[6,] 252.5  0.4
[7,] 257.5  0.8
[8,] 432.5  0.4
     [,1] [,2]
[1] "making cruise html"
[1] "2017-04-06 18:09:29 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"