[1] "2025-04-29 22:46:34 MDT" [1] "1501" "141231" "d365" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141231a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:46:38 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.82, ave o2scale2 = 0.74" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "5 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.82, ave o2scale2 = 0.74" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "7 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:46:38 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:46:38 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:46:56 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:46:57 MDT" [1] "reading in recalculated plot titles" [1] "Removed 7 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1429 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:47:02 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.94 co2off = 388.72 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.79 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 88 97 0.06318056 0.06944329 0.06700830 2 16.482320 123.7259 3 2 98 107 0.07013889 0.07640165 0.07396742 2 -12.951187 276.9241 5 2 385 394 0.27190020 0.27816319 0.27572837 3 -12.807570 271.9812 6 4 395 404 0.27885854 0.28511806 0.28268362 3 16.646547 123.3280 7 3 405 414 0.28581345 0.29207289 0.29102954 3 6.787000 207.1938 9 4 685 694 0.48057561 0.48683900 0.48440209 2 16.654461 138.0038 10 2 695 704 0.48753443 0.49379722 0.49136009 2 -12.795625 272.3987 11 5 705 714 0.49449259 0.50075148 0.49970851 NA 5.560719 192.6934 13 2 982 990 0.68828273 0.69384633 0.69176007 3 -12.870330 270.7696 14 4 991 999 0.69454175 0.70010564 0.69801948 3 16.554027 132.0767 15 3 1000 1008 0.70080116 0.70636916 0.70567363 3 6.671179 210.8480 17 4 1282 1291 0.89702083 0.90328458 0.90084790 2 16.340453 123.9296 18 2 1292 1301 0.90397995 0.91024306 0.90780810 2 -13.111758 275.6966 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.210151 1.341091 -1.001066e-03 -2.3838335 0.004167187 7.552293 3 1.210364 1.341402 -2.861927e-03 2.4971277 0.007393439 8.826301 5 1.215146 1.346619 -1.340666e-03 -0.2671305 0.003856297 2.322489 6 1.215321 1.346840 1.944811e-03 1.7103055 0.007534056 7.634068 7 1.215660 1.347209 1.432290e-03 4.1040859 0.005664642 5.531096 9 1.220696 1.353042 -9.068035e-04 2.9718596 0.006027831 7.684308 10 1.220974 1.353376 -1.464068e-03 2.1777170 0.008899927 7.119900 11 1.220997 1.353467 -5.182533e-03 -3.7320340 0.003668116 5.626311 13 1.223536 1.356558 -4.238302e-05 0.3528864 0.001777212 5.974693 14 1.223543 1.356665 -8.848120e-04 1.4385960 0.003747544 7.745693 15 1.223835 1.356865 -4.029214e-03 5.4269956 0.008885882 5.469951 17 1.225573 1.359154 8.868125e-04 -2.6736306 0.004288006 9.716971 18 1.225572 1.359150 -2.600265e-03 1.1661021 0.007183146 6.379870 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 388.733 co2l1 = 0.938 co2l0 = 0.01" [1] "co2l0 = -142 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "24 out of 35 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "11 out of 1250 1-min values rejected as stack air" [1] "11 out of 1250 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"