[1] "2025-04-29 22:44:02 MDT" [1] "1411" "141221" "d355" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141221a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 48572 63 [1] 48572 [1] 48572 [1] "testing skipping spike filter" [1] 48572 [1] 48572 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:44:04 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.819, ave o2scale2 = 0.739" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "36 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.819, ave o2scale2 = 0.739" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "36 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:44:04 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:44:04 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:44:15 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:44:16 MDT" [1] "reading in recalculated plot titles" [1] "Removed 37 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 772 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:44:18 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.5" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.932 co2off = 401.19 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.87 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 182 191 0.1392985 0.1455584 0.1431244 3 -11.596164 287.3215 3 4 192 200 0.1462538 0.1525166 0.1499335 3 18.033641 139.4843 4 3 201 206 0.1532118 0.1594718 0.1601671 3 8.109984 210.9408 6 4 466 475 0.3479751 0.3542383 0.3518024 2 17.924437 133.5898 7 2 476 485 0.3549338 0.3611933 0.3587588 2 -11.691984 280.7951 8 5 486 495 0.3618887 0.3681478 0.3671047 NA 6.967656 192.3614 10 2 764 772 0.5566612 0.5622248 0.5601386 1 -11.757143 276.8590 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.220722 1.353252 -0.0021373842 3.0550543 0.006130367 12.499757 3 1.220733 1.353285 0.0029411580 -0.3848843 0.007940064 2.262555 4 1.220766 1.353654 -0.0026183491 -4.7578065 0.010267056 6.737105 6 1.223800 1.353941 0.0001602735 0.4085787 0.001495529 4.423045 7 1.223940 1.354220 -0.0002183450 -2.5019094 0.007001176 7.059740 8 1.223785 1.354246 -0.0038078988 0.1781300 0.002695845 4.943829 10 1.220989 1.351859 -0.0016471382 2.2470546 0.004118163 5.799750 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 387.517 co2l1 = 0.932 co2l0 = 0.002" [1] "co2l0 = -142.48 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "140 out of 166 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "26 out of 676 1-min values rejected as stack air" [1] "26 out of 676 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "untarring JGOFS directory for this cruise" [1] "making html"