[1] "2025-04-29 22:42:59 MDT" [1] "1411" "141219" "d353" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141219a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:43:04 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.764" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.764" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:43:04 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:43:04 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:43:26 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:43:28 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 341 row(s) with low FLWTA" [1] "TEMP: 1093 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:43:33 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635.1" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 401.07 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 62 71 0.04456195 0.05082219 0.04838761 2 3.434781 381.3904 3 2 72 81 0.05151808 0.05778128 0.05534614 2 -25.810914 528.0778 5 2 362 371 0.25323727 0.25949659 0.25706217 3 -25.830586 527.0200 6 4 372 381 0.26019213 0.26645515 0.26401866 3 3.413852 379.9765 7 5 382 391 0.26715098 0.27342488 0.27238186 NA -7.761719 442.7536 8 3 392 401 0.27412057 0.28038377 0.27934066 3 -6.413953 461.3328 10 4 662 671 0.46194193 0.46820486 0.46577067 2 3.420891 381.6312 11 2 672 681 0.46890422 0.47516340 0.47272942 2 -25.842773 520.8969 13 2 961 970 0.67041782 0.67667708 0.67424297 3 -25.834734 519.8896 14 4 971 980 0.67737538 0.68363542 0.68120137 3 3.427586 384.0963 15 3 981 990 0.68433102 0.69059349 0.68955027 3 -6.358016 461.4047 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.182147 1.307458 0.0008883701 0.85841042 0.002636666 4.020953 3 1.182292 1.307565 -0.0022574635 -0.55705642 0.008859452 3.581542 5 1.181325 1.306405 0.0010541950 0.43996039 0.003708842 2.316627 6 1.181205 1.306274 0.0006447654 -0.02378212 0.002954442 2.953525 7 1.180962 1.305973 -0.0058054850 2.63980730 0.004110058 3.682368 8 1.180934 1.305968 -0.0027842480 -0.89436131 0.007981826 2.589639 10 1.181964 1.307238 -0.0011026893 -0.13574804 0.004279800 2.094081 11 1.181983 1.307264 -0.0012430588 -0.88583718 0.004445972 6.710737 13 1.184458 1.310011 -0.0023820670 1.38929550 0.006110017 5.485627 14 1.184603 1.310171 0.0022253592 0.98835819 0.006398585 4.463517 15 1.184842 1.310402 0.0018247570 1.82230043 0.005750461 3.480005 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.007 co2l1 = 0.944 co2l0 = 0.001" [1] "co2l0 = -199.44 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "63 out of 100 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "37 out of 951 1-min values rejected as stack air" [1] "37 out of 951 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"