[1] "2025-04-29 22:42:21 MDT" [1] "1411" "141218" "d352" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141218a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86100 63 [1] 86100 [1] 86100 [1] "testing skipping spike filter" [1] 86100 [1] 86100 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:42:25 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.844, ave o2scale2 = 0.763" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "3 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.844, ave o2scale2 = 0.763" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "5 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:42:25 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:42:25 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:42:46 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:42:48 MDT" [1] "reading in recalculated plot titles" [1] "Removed 5 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1429 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:42:54 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 401.06 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.03 minutes" [1] "Average Cal: 9.03 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.04 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 10 0.001866377 0.008133189 0.005698101 3 -25.766852 532.0134 2 4 11 20 0.008828704 0.015088021 0.012653769 3 3.483141 382.6098 3 5 21 30 0.015783478 0.022043345 0.020999588 NA -7.368125 439.2938 4 3 31 40 0.022741956 0.029001244 0.027957928 3 -6.308109 460.9142 6 4 301 310 0.210547454 0.216807031 0.214372765 2 3.506914 384.1552 7 2 311 320 0.217502749 0.223761690 0.221327742 2 -25.761687 529.7256 9 2 599 608 0.419170370 0.425442737 0.423003378 3 -25.779750 531.7955 10 4 609 618 0.426140104 0.432412992 0.429973199 3 3.479359 381.0462 11 3 619 628 0.433110041 0.439381829 0.438336473 3 -6.316922 461.2061 13 4 896 905 0.627629659 0.633902170 0.631462731 2 3.433961 380.8797 14 2 906 915 0.634599537 0.640871528 0.638432208 2 -25.821602 530.9085 15 5 916 925 0.641568287 0.647841464 0.646795985 NA -7.743062 447.9216 17 2 1195 1204 0.836156192 0.842429398 0.839989486 3 -25.842328 534.9357 18 4 1205 1214 0.843126476 0.849399392 0.846959701 3 3.420266 384.3662 19 3 1215 1224 0.850096991 0.856375116 0.855329651 3 -6.367664 469.4003 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.186787 1.313879 -0.0010191067 -0.96660488 0.002580606 2.980801 2 1.186605 1.313694 0.0012406951 0.41350134 0.005217667 1.946633 3 1.186535 1.313612 -0.0029927675 -0.94935308 0.002121320 2.090097 4 1.186722 1.313731 0.0011263731 -0.19844600 0.004640509 2.033600 6 1.186173 1.312841 -0.0006233568 1.32630180 0.002648689 3.708061 7 1.186197 1.312889 -0.0026169308 0.78610195 0.008281124 2.222816 9 1.186050 1.312411 -0.0009400671 1.16049816 0.003557092 3.881213 10 1.186000 1.312390 0.0019466554 -0.57125184 0.005761223 5.143391 11 1.186094 1.312437 -0.0016726703 -1.30082022 0.004731136 2.853134 13 1.184756 1.310931 0.0008147466 -1.97420674 0.002771414 8.318870 14 1.184901 1.311070 -0.0026784557 -1.20408267 0.008041809 5.150539 15 1.184753 1.310914 -0.0026144333 -2.78762568 0.001856155 4.327704 17 1.182997 1.308481 -0.0002104231 3.36329441 0.004215425 9.244418 18 1.183028 1.308502 0.0024771305 0.08134886 0.006328943 2.873345 19 1.183236 1.308741 -0.0013518890 3.58662508 0.004073945 4.771538 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.966 co2l1 = 0.944 co2l0 = 0" [1] "co2l0 = -195.39 co2l1 = 0.214" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "5 out of 5 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1224 1-min values rejected as stack air" [1] "0 out of 1224 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"