[1] "2025-04-29 22:41:12 MDT" [1] "1411" "141216" "d350" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141216a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:41:17 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.841, ave o2scale2 = 0.759" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.841, ave o2scale2 = 0.759" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:41:17 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:41:17 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:41:38 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:41:39 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1434 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:41:42 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 400.94 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.03 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.17 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 175 184 0.1235309 0.1297900 0.1273559 2 3.589719 385.0054 3 2 185 194 0.1304854 0.1367525 0.1343178 2 -25.662531 530.3777 4 5 195 204 0.1374480 0.1437073 0.1426640 NA -7.419094 444.1538 8 2 475 484 0.3322458 0.3385058 0.3360716 3 -25.660375 527.9612 9 4 485 494 0.3392015 0.3454606 0.3430267 3 3.609500 385.4315 10 3 495 504 0.3461563 0.3524156 0.3513726 3 -6.206797 464.9608 12 4 775 784 0.5409253 0.5471851 0.5447505 2 3.549477 385.5559 13 2 785 794 0.5478806 0.5541397 0.5517054 2 -25.690742 529.1771 15 2 1075 1084 0.7496143 0.7559853 0.7535079 3 -25.724586 531.6061 16 4 1085 1094 0.7566807 0.7629438 0.7605074 3 3.532273 382.7371 17 5 1095 1104 0.7636391 0.7699023 0.7688592 NA -7.376469 438.6822 18 3 1105 1114 0.7705976 0.7768609 0.7758176 3 -6.253594 457.5922 20 4 1375 1384 0.9584127 0.9646725 0.9622382 2 3.537680 385.4659 21 2 1385 1394 0.9653681 0.9716273 0.9691930 2 -25.718625 528.6941 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.192658 1.322023 -2.046024e-03 -0.87143093 0.0055587367 2.782268 3 1.192675 1.322044 -2.748742e-03 -0.38767338 0.0089543111 5.393469 4 1.192432 1.321771 -3.057150e-03 -1.00943472 0.0021655145 1.346745 8 1.191183 1.320220 -7.414481e-04 0.72366729 0.0051480319 3.209017 9 1.191060 1.320071 1.570834e-03 0.01278683 0.0065329693 1.770651 10 1.191011 1.319982 -2.285375e-03 -1.87127254 0.0062892296 2.436336 12 1.188477 1.317353 1.712246e-03 1.36396293 0.0046233030 3.565313 13 1.188543 1.317422 -2.052593e-03 -0.72420479 0.0053759797 2.611564 15 1.187128 1.315724 -1.671678e-03 0.31740198 0.0046324671 2.541013 16 1.187108 1.315707 2.917356e-03 0.64836721 0.0083001007 3.613746 17 1.187061 1.315696 -8.114856e-04 -0.83342082 0.0005745243 1.318280 18 1.187208 1.315877 9.061792e-06 -1.98611765 0.0069653960 3.246177 20 1.186896 1.315439 4.791983e-04 -0.36970186 0.0033092871 2.000859 21 1.186921 1.315447 -2.332693e-03 0.54303513 0.0086811706 2.795056 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.873 co2l1 = 0.944 co2l0 = 0" [1] "co2l0 = -198.41 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "123 out of 190 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "67 out of 1238 1-min values rejected as stack air" [1] "67 out of 1120 Line 1 1-min values rejected as stack air" [1] "0 out of 118 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"