[1] "2025-04-29 22:40:38 MDT" [1] "1411" "141215" "d349" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141215a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:40:42 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.842, ave o2scale2 = 0.76" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "7 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.842, ave o2scale2 = 0.76" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "7 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:40:42 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:40:42 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:41:03 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:41:04 MDT" [1] "reading in recalculated plot titles" [1] "Removed 7 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 17 row(s) with high TFRIDGE" [1] "TEMP: 1410 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:41:08 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 400.93 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 114 123 0.08032474 0.08658556 0.08415051 3 -25.739633 533.3240 3 4 124 133 0.08728093 0.09354008 0.09110589 3 3.497977 381.6115 4 3 134 143 0.09423553 0.10049534 0.09945196 3 -6.314242 465.4928 6 4 414 423 0.28903290 0.29529398 0.29285901 2 3.503008 383.5367 7 2 424 433 0.29598961 0.30225582 0.29981922 2 -25.748211 533.4659 9 2 712 721 0.49775116 0.50401042 0.50157607 3 -25.687578 530.1573 10 4 722 731 0.50470602 0.51096583 0.50853158 3 3.571367 385.2067 11 5 732 741 0.51166126 0.51792477 0.51688141 NA -7.571156 449.3659 12 3 742 751 0.51862054 0.52488009 0.52383675 3 -6.248672 462.6257 14 4 1012 1021 0.70645990 0.71271991 0.71028531 2 3.587266 383.3073 15 2 1022 1031 0.71341551 0.71967486 0.71724060 2 -25.667070 532.3008 17 2 1288 1297 0.91483955 0.92109954 0.91866495 3 -25.678945 528.3834 18 4 1298 1307 0.92179525 0.92805587 0.92562077 3 3.586438 383.2475 19 3 1308 1317 0.92875466 0.93501513 0.93397080 3 -6.209258 457.9119 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.185102 1.313614 -0.0005429217 -0.01643596 0.001567470 1.2361727 3 1.184817 1.313296 0.0009501460 0.54138049 0.005241377 3.5791297 4 1.184693 1.313172 -0.0012561208 3.77922990 0.003612577 4.9132197 6 1.184440 1.312929 0.0005622609 0.53148180 0.003449158 2.8608400 7 1.184661 1.313167 -0.0014651071 -0.46639914 0.004992063 2.4851969 9 1.188508 1.317368 0.0011323412 -1.04839095 0.005752207 2.8836802 10 1.188450 1.317322 0.0040065536 0.54260210 0.010751165 3.0966653 11 1.188388 1.317233 -0.0076750281 -0.63314755 0.005435883 0.8922185 12 1.188423 1.317282 -0.0019747534 -0.61545163 0.006276795 0.9114265 14 1.190808 1.319998 0.0017976038 1.41674195 0.004809629 3.7135142 15 1.191066 1.320288 -0.0029650958 -0.07903087 0.009170169 2.2146046 17 1.192103 1.321469 -0.0004969378 0.41658018 0.002672704 1.6171848 18 1.192143 1.321517 0.0046560332 0.03497797 0.012825886 1.1380748 19 1.192242 1.321618 0.0006234958 0.12849184 0.003263611 0.9575453 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.89 co2l1 = 0.944 co2l0 = 0.001" [1] "co2l0 = -196.14 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "57 out of 73 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "16 out of 1228 1-min values rejected as stack air" [1] "16 out of 1228 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"