[1] "2025-04-29 22:39:37 MDT" [1] "1411" "141213" "d347" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141213a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:39:41 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.84, ave o2scale2 = 0.758" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "57 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.84, ave o2scale2 = 0.758" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "57 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:39:41 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:39:41 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:40:01 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:40:02 MDT" [1] "reading in recalculated plot titles" [1] "Removed 57 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1379 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:40:07 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 395.44 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.88 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.07 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 129 136 0.09934592 0.1042146 0.1024758 2 3.568187 388.9798 3 2 137 142 0.10630101 0.1125604 0.1115173 2 -25.701719 517.7182 5 2 390 399 0.30805914 0.3143192 0.3118848 3 -25.660313 527.2706 6 4 400 409 0.31501493 0.3212743 0.3188397 3 3.588719 379.9010 7 5 410 419 0.32196982 0.3282328 0.3271893 NA -7.409094 439.0992 8 3 420 429 0.32892824 0.3351883 0.3341448 3 -6.245812 456.7510 10 4 688 697 0.51677674 0.5230363 0.5206019 2 3.551625 383.6184 11 2 698 707 0.52373171 0.5299909 0.5275569 2 -25.686156 532.1657 13 2 985 994 0.72544329 0.7317024 0.7292682 3 -25.666508 528.4898 14 4 995 1004 0.73240512 0.7387069 0.7362412 3 3.573070 385.6908 15 3 1005 1014 0.73940223 0.7456611 0.7446180 3 -6.218469 464.3841 17 4 1285 1294 0.93420402 0.9404672 0.9380306 2 3.613687 383.5342 18 2 1295 1304 0.94116250 0.9474221 0.9449876 2 -25.628937 527.7469 19 5 1305 1314 0.94811739 0.9543764 0.9533334 NA -7.384094 442.7111 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.188360 1.316816 0.0018827539 3.2735687 0.003973742 6.4905516 3 1.187703 1.316039 -0.0073400471 12.3050202 0.011080494 16.7031300 5 1.190919 1.319443 0.0008557419 -0.1598380 0.002551698 1.9864556 6 1.190886 1.319421 0.0017485882 0.5385325 0.006203488 2.2436746 7 1.190879 1.319437 -0.0073018515 1.8984401 0.005170718 3.0594666 8 1.190835 1.319406 -0.0025777135 -1.1741886 0.007063014 2.0241345 10 1.189142 1.317770 -0.0017607808 0.5593094 0.004465393 3.1895250 11 1.189287 1.317903 0.0013105723 2.9489587 0.006990507 8.4020660 13 1.191279 1.320119 -0.0024939565 -0.7726110 0.007275543 2.9366984 14 1.191276 1.320115 0.0024394323 -2.1322832 0.006377489 6.5673349 15 1.191534 1.320432 -0.0007267629 0.3165626 0.005051189 2.3392777 17 1.194222 1.323361 0.0018251424 -0.3970461 0.006583512 3.8493310 18 1.194347 1.323502 -0.0018156660 0.1683206 0.006970922 0.9981016 19 1.194283 1.323427 -0.0033083645 -2.4374662 0.002342291 3.7696761 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.861 co2l1 = 0.944 co2l0 = 0.002" [1] "co2l0 = -199.95 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "48 out of 225 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "177 out of 1193 1-min values rejected as stack air" [1] "177 out of 1193 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"