[1] "2025-04-29 22:37:46 MDT" [1] "1411" "141210" "d344" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141210a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:37:50 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.84, ave o2scale2 = 0.758" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "32 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.84, ave o2scale2 = 0.758" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "32 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:37:50 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:37:50 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:38:12 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:38:14 MDT" [1] "reading in recalculated plot titles" [1] "Removed 32 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1404 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:38:19 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.24 O2 = -635" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 405.77 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.6 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 243 252 0.1770463 0.1833062 0.1808717 2 3.710031 386.4490 3 2 253 262 0.1840015 0.1902656 0.1878292 2 -25.534102 527.4531 4 5 263 272 0.1909613 0.1972211 0.1961776 NA -7.287344 462.1396 6 2 542 551 0.3857427 0.3920023 0.3895682 3 -25.562758 537.6694 7 4 552 561 0.3926980 0.3989573 0.3965233 3 3.670125 383.6586 8 3 562 571 0.3996528 0.4059124 0.4048693 3 -6.143469 463.5664 10 4 837 846 0.5944188 0.6006782 0.5982444 2 3.538078 384.1413 11 2 847 855 0.6013739 0.6069414 0.6048546 2 -25.721161 522.7530 13 2 1133 1142 0.8031377 0.8093971 0.8069630 3 -25.753781 530.8491 14 4 1143 1150 0.8100927 0.8156562 0.8136860 3 3.496862 381.4935 16 3 1160 1167 0.8253970 0.8302660 0.8299183 3 -6.321563 464.4360 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.197271 1.326402 2.028282e-03 0.45981031 0.006343321 3.911924 3 1.197634 1.326843 -2.269817e-03 -1.61769108 0.008209311 4.748847 4 1.197605 1.326832 -5.304102e-03 -7.95263430 0.003756505 12.679715 6 1.195558 1.324829 8.249686e-05 -4.11960921 0.003249732 18.820373 7 1.195261 1.324577 -1.097758e-04 0.09310098 0.004451374 4.621144 8 1.195103 1.324404 -3.952997e-04 1.51492228 0.003055842 2.210744 10 1.186096 1.314366 -9.584359e-04 -0.39363012 0.004072549 5.311012 11 1.185793 1.314125 -1.819417e-03 3.15332578 0.007540935 9.821994 13 1.182010 1.309632 2.912739e-04 -0.23388257 0.002338297 6.689453 14 1.181956 1.309525 1.424584e-03 -6.48344350 0.007842975 17.530074 16 1.182211 1.309737 2.453163e-03 -7.53153571 0.005252975 5.333145 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.838 co2l1 = 0.944 co2l0 = 0.002" [1] "co2l0 = -197.79 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "21 out of 80 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "59 out of 1241 1-min values rejected as stack air" [1] "58 out of 1199 Line 1 1-min values rejected as stack air" [1] "1 out of 42 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"