[1] "2025-04-29 22:34:17 MDT" [1] "1411" "141204" "d338" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141204a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:34:21 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.834, ave o2scale2 = 0.753" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.834, ave o2scale2 = 0.753" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:34:21 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:34:21 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:34:42 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:34:44 MDT" [1] "reading in recalculated plot titles" [1] "Removed 1 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1435 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:34:48 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -635" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 400.46 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.07 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 193 202 0.1352653 0.1415245 0.1390905 3 -25.301820 532.6804 3 4 203 212 0.1422199 0.1484832 0.1460472 3 3.953320 384.4643 4 3 213 222 0.1491785 0.1554382 0.1543950 3 -5.861273 467.1876 6 4 493 502 0.3439667 0.3502257 0.3477918 2 3.999008 380.4622 7 2 503 512 0.3509213 0.3572185 0.3547632 2 -25.268375 525.6444 9 2 793 802 0.5528043 0.5590637 0.5566295 3 -25.321234 529.1979 10 4 803 812 0.5597593 0.5660185 0.5635843 3 3.936781 383.4739 11 5 813 822 0.5667141 0.5729732 0.5719300 NA -7.048656 445.1660 12 3 823 832 0.5736688 0.5799276 0.5788846 3 -5.855211 456.8406 14 4 1093 1102 0.7615162 0.7677755 0.7653412 2 3.916219 381.1761 15 2 1103 1112 0.7684710 0.7747304 0.7722965 2 -25.366328 530.2865 17 2 1393 1402 0.9701780 0.9764370 0.9740029 3 -25.368234 529.0479 18 4 1403 1412 0.9771365 0.9833959 0.9809616 3 3.903414 383.6166 19 3 1413 1422 0.9840914 0.9903560 0.9893129 3 -5.905344 462.7811 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.199783 1.329236 -0.0008209946 1.3343513 0.002544128 4.873502 3 1.199653 1.329101 0.0017168094 -0.6749323 0.004786681 3.035239 4 1.199688 1.329141 -0.0014166127 0.4511762 0.004240791 1.255407 6 1.200329 1.329768 -0.0001254272 -0.4053380 0.004547055 3.340070 7 1.200414 1.329853 -0.0014484774 0.6593205 0.008401942 1.991748 9 1.198890 1.328107 -0.0002703108 -0.4836730 0.003732063 3.259185 10 1.198878 1.328090 0.0004680322 0.4039157 0.004905809 1.841389 11 1.198886 1.328102 -0.0049303100 1.1558951 0.003491340 1.541385 12 1.198892 1.328119 -0.0021984245 -0.5691942 0.006516714 3.510309 14 1.198710 1.328044 -0.0015337272 -1.1447473 0.006082763 3.993439 15 1.198571 1.327880 -0.0052234033 -0.3084480 0.013810409 1.342649 17 1.199136 1.328622 0.0017489341 0.4727106 0.004953438 1.522132 18 1.199140 1.328624 0.0011242110 -0.2995561 0.006894043 3.665488 19 1.199227 1.328702 0.0004069506 2.8330198 0.006188988 3.869221 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.519 co2l1 = 0.943 co2l0 = 0.001" [1] "co2l0 = -196.77 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "104 out of 190 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "86 out of 1253 1-min values rejected as stack air" [1] "86 out of 1253 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"