[1] "2025-04-29 22:33:42 MDT" [1] "1411" "141203" "d337" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141203a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85080 63 [1] 85080 [1] 85080 [1] "testing skipping spike filter" [1] 85080 [1] 85080 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:33:46 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.838, ave o2scale2 = 0.756" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.838, ave o2scale2 = 0.756" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:33:46 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:33:46 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:34:07 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:34:09 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1416 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:34:12 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -635" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 400.49 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.2 minutes" [1] "Average Cal: 9.14 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.22 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 130 139 0.09093365 0.09719282 0.0947586 2 3.903258 380.6513 3 2 140 149 0.09788811 0.10414708 0.1017131 2 -25.356578 527.0907 5 2 430 439 0.29960304 0.30586690 0.3034321 3 -25.321289 526.5028 6 4 440 449 0.30656363 0.31284259 0.3103988 3 3.958773 384.9343 7 5 450 459 0.31354198 0.31984838 0.3187955 NA -6.811187 447.2327 8 3 460 469 0.32055165 0.32688388 0.3258281 3 -5.840781 458.0057 10 4 725 734 0.50861227 0.51500521 0.5125188 2 3.963266 382.3581 11 2 735 744 0.51571539 0.52211178 0.5196220 2 -25.283727 530.6163 13 2 1019 1028 0.71752555 0.72391997 0.7214329 3 -25.273320 529.3819 14 4 1029 1038 0.72463027 0.73102263 0.7285359 3 3.971086 385.1048 15 3 1039 1048 0.73173348 0.73813362 0.7370675 3 -5.833070 464.1872 17 4 1313 1322 0.92640278 0.93279473 0.9303086 2 3.989367 379.6491 18 2 1323 1332 0.93350527 0.93989731 0.9374123 2 -25.267875 528.6275 19 5 1333 1342 0.94060747 0.94699922 0.9459342 NA -7.015313 444.3803 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.189862 1.317881 -0.0014910226 -0.04678088 0.0043956702 1.089028 3 1.190055 1.318099 -0.0005365621 0.93788054 0.0050004185 2.875115 5 1.191936 1.320340 0.0012026703 -0.55967315 0.0033337321 3.114437 6 1.191995 1.320380 0.0038067202 -0.14266431 0.0105943854 4.082172 7 1.192249 1.320665 0.0013607686 1.91783676 0.0009722718 2.769278 8 1.192259 1.320660 -0.0016865963 -1.09771537 0.0045267065 2.278013 10 1.194001 1.322716 0.0021906838 -0.05602937 0.0063734898 1.785351 11 1.194277 1.323032 -0.0008784177 1.24104912 0.0051551744 4.359874 13 1.196442 1.325492 -0.0010695094 -0.28777964 0.0037638787 1.553996 14 1.196419 1.325460 0.0007977373 -0.35139460 0.0045061884 1.864751 15 1.196485 1.325518 -0.0004379985 3.43169946 0.0028304856 4.685530 17 1.198439 1.327534 -0.0007733692 -0.66626705 0.0028126860 5.911974 18 1.198530 1.327650 -0.0011105501 -0.38094306 0.0062305949 3.800062 19 1.198614 1.327790 -0.0052567237 4.04100188 0.0038006989 5.383175 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.502 co2l1 = 0.944 co2l0 = 0.001" [1] "co2l0 = -197.24 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "15 out of 15 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1224 1-min values rejected as stack air" [1] "0 out of 1224 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"