[1] "2025-04-29 22:33:05 MDT" [1] "1411" "141202" "d336" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141202a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:33:09 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.842, ave o2scale2 = 0.761" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "3 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.842, ave o2scale2 = 0.761" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "3 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:33:10 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:33:10 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:33:31 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:33:33 MDT" [1] "reading in recalculated plot titles" [1] "Removed 3 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1433 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:33:37 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -635" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 400.62 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 66 75 0.04757280 0.05383252 0.05139816 3 -25.286750 529.2143 3 4 76 85 0.05452778 0.06078712 0.05835299 3 3.993406 382.4034 4 5 86 95 0.06148273 0.06774190 0.06669865 NA -6.822656 445.3069 5 3 96 105 0.06843750 0.07469676 0.07365348 3 -5.830344 460.2908 7 4 366 375 0.25625116 0.26251047 0.26007629 2 3.975594 379.1893 8 2 376 385 0.26320602 0.26947396 0.26703463 2 -25.314250 530.3796 10 2 665 674 0.46492130 0.47118061 0.46874628 3 -25.325586 530.0493 11 4 675 684 0.47187624 0.47813900 0.47570366 3 3.953602 385.0291 12 3 685 694 0.47883458 0.48509381 0.48405092 3 -5.835922 460.5667 14 4 965 974 0.67358704 0.67984656 0.67741219 2 3.914336 380.1894 15 2 975 984 0.68054204 0.68680208 0.68436746 2 -25.355633 527.8441 16 5 985 994 0.68749757 0.69375666 0.69271348 NA -6.883031 442.0124 18 2 1265 1274 0.88226968 0.88852894 0.88609455 3 -25.415828 528.5380 19 4 1275 1284 0.88922448 0.89548339 0.89304926 3 3.860438 382.1602 20 3 1285 1294 0.89617914 0.90243869 0.90139529 3 -5.925273 456.9321 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.188032 1.315620 -0.0032997144 1.1298709 0.008807148 3.6833624 3 1.188104 1.315717 0.0021532840 1.7607342 0.005836978 6.0802667 4 1.188231 1.315851 0.0025582363 -0.4401462 0.001811961 1.2794796 5 1.188277 1.315906 -0.0007829335 -0.6851084 0.003851455 1.0827711 7 1.188672 1.316280 -0.0005126832 2.7319741 0.002215258 8.5121689 8 1.188652 1.316284 -0.0014310496 0.8457922 0.007009560 3.9934755 10 1.187642 1.315275 0.0008565775 0.4706151 0.006160967 2.4846059 11 1.187557 1.315201 0.0027854936 0.4878981 0.007077610 1.6368245 12 1.187729 1.315391 0.0003893214 0.2480653 0.003011094 0.4351723 14 1.186333 1.313812 0.0001612435 1.0082740 0.003399537 4.0628813 15 1.186468 1.313977 -0.0015085908 1.2991180 0.005396597 3.6219012 16 1.186452 1.313951 -0.0019350006 -0.3216963 0.001370019 0.8823998 18 1.186477 1.313962 -0.0009701826 0.1931629 0.004040359 1.8099837 19 1.186520 1.314039 0.0036803915 -0.6605672 0.010113254 2.2626014 20 1.186866 1.314420 0.0005120029 -4.4889988 0.003773577 5.9012390 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.52 co2l1 = 0.943 co2l0 = 0" [1] "co2l0 = -196.16 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "64 out of 150 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "86 out of 1226 1-min values rejected as stack air" [1] "86 out of 1226 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"