[1] "2025-04-29 22:32:30 MDT" [1] "1411" "141201" "d335" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141201a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:32:34 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.763" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "16 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.763" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "16 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:32:34 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:32:34 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:32:56 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:32:57 MDT" [1] "reading in recalculated plot titles" [1] "Removed 16 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1420 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:33:00 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.4" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -635" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 400.53 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.11 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 3 12 0.003898032 0.01015741 0.00772326 2 3.973195 379.2819 3 2 13 22 0.010854659 0.01717833 0.01472015 2 -25.319023 523.5286 5 2 294 303 0.212835648 0.21909488 0.21666062 3 -25.283586 530.0533 6 4 304 313 0.219790249 0.22604957 0.22361542 3 3.990883 383.9169 7 3 314 323 0.226744907 0.23300451 0.23196124 3 -5.816969 462.6612 9 4 593 602 0.421527807 0.42778750 0.42535312 2 4.032758 381.6650 10 2 603 612 0.428482813 0.43474196 0.43230795 2 -25.254156 529.2422 11 5 613 622 0.435437616 0.44169687 0.44065353 NA -6.801156 444.4164 13 2 891 900 0.630215017 0.63647454 0.63404011 3 -25.282727 527.4147 14 4 901 910 0.637169907 0.64342940 0.64099500 3 4.002102 381.7013 15 3 911 920 0.644125000 0.65038426 0.64934102 3 -5.813516 462.7866 17 4 1190 1199 0.838889525 0.84514829 0.84271440 2 3.977688 383.3763 18 2 1200 1209 0.845843866 0.85210301 0.84966918 2 -25.302594 530.6203 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.177194 1.303354 -7.643078e-04 -0.19549329 2.967540e-03 3.2950483 3 1.177436 1.303627 -9.514487e-04 0.66717126 5.567658e-03 3.1134117 5 1.182859 1.309438 -3.443776e-03 0.65468522 9.512441e-03 2.8595644 6 1.182882 1.309420 1.580226e-03 1.03885158 5.546922e-03 3.4949084 7 1.183053 1.309647 -7.519049e-04 -0.02175036 3.522726e-03 0.4088854 9 1.183688 1.310414 3.503651e-05 -0.09535520 2.922633e-03 2.2697498 10 1.183723 1.310440 -4.664656e-03 1.22234579 1.229415e-02 3.2255106 11 1.183579 1.310291 6.238563e-05 -0.72022941 4.419417e-05 2.2516110 13 1.184164 1.311108 -8.268718e-04 -0.02058276 2.897801e-03 1.4371600 14 1.184158 1.311104 7.969833e-04 0.68142704 4.838685e-03 2.4045664 15 1.184255 1.311222 -2.371456e-03 0.11966741 6.119326e-03 0.2975697 17 1.186487 1.313872 -1.268999e-03 0.75612323 3.390836e-03 4.2884416 18 1.186647 1.314057 -1.304863e-03 0.99764237 6.777639e-03 2.9388909 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.47 co2l1 = 0.943 co2l0 = 0.001" [1] "co2l0 = -197 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "45 out of 183 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "138 out of 1238 1-min values rejected as stack air" [1] "138 out of 1238 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"