[1] "2025-04-29 22:31:19 MDT" [1] "1411" "141129" "d333" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141129a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:31:23 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.826, ave o2scale2 = 0.746" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "12 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.826, ave o2scale2 = 0.746" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "12 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:31:24 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:31:24 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:31:44 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:31:46 MDT" [1] "reading in recalculated plot titles" [1] "Removed 12 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1424 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:31:49 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -635" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 399.84 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 168 177 0.1257790 0.1320418 0.1296078 3 -24.410445 527.5689 3 4 178 187 0.1327374 0.1389971 0.1365630 3 4.856609 386.5260 4 3 188 197 0.1396925 0.1459517 0.1449087 3 -4.945891 465.3451 6 4 468 477 0.3344641 0.3407269 0.3382904 2 4.812820 387.6413 7 2 478 487 0.3414225 0.3476852 0.3452497 2 -24.445977 530.5518 9 2 768 777 0.5431488 0.5494114 0.5469773 3 -24.558914 524.9104 10 4 778 787 0.5501068 0.5563662 0.5539322 3 4.716766 380.7899 11 5 788 797 0.5570616 0.5633209 0.5622779 NA -6.073031 439.5951 12 3 798 807 0.5640163 0.5702791 0.5692362 3 -5.096555 454.5319 14 4 1068 1077 0.7518406 0.7581039 0.7556697 2 4.610438 384.6046 15 2 1078 1087 0.7587993 0.7650588 0.7626245 2 -24.641438 528.6243 17 2 1368 1377 0.9605158 0.9667766 0.9643413 3 -24.773367 530.2761 18 4 1378 1387 0.9674746 0.9737373 0.9713004 3 4.501992 384.3782 19 3 1388 1397 0.9744329 0.9806921 0.9796488 3 -5.319578 459.9489 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.215100 1.346166 -0.0015782626 0.3179966 0.005343078 5.1314793 3 1.215174 1.345996 0.0025556393 2.3286702 0.007989373 9.3231667 4 1.215007 1.345861 -0.0014739935 -2.1731887 0.003660197 3.1723614 6 1.213119 1.343461 0.0007642376 0.8086565 0.002820017 5.8050701 7 1.213007 1.343420 -0.0009300521 1.3619155 0.005628663 7.0498990 9 1.210880 1.340893 -0.0009992606 -0.3201704 0.003685447 3.1510511 10 1.210808 1.340802 0.0027474268 -0.2314761 0.008603477 2.3322033 11 1.210750 1.340791 -0.0021847690 -1.6813507 0.001546796 3.9197724 12 1.210779 1.340793 0.0004640203 10.2596293 0.002109036 14.3825029 14 1.208672 1.338453 0.0040936509 -0.8554932 0.010434425 2.4228722 15 1.208811 1.338608 0.0007086550 -0.4134594 0.005578978 2.7466696 17 1.203047 1.332086 -0.0012738456 0.1358861 0.003845573 0.9839895 18 1.202709 1.331704 0.0012536045 0.8150186 0.009257805 2.4506670 19 1.202567 1.331526 -0.0018531335 1.7175420 0.006681260 2.3031192 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.804 co2l1 = 0.943 co2l0 = 0.002" [1] "co2l0 = -198.99 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "62 out of 175 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "113 out of 1242 1-min values rejected as stack air" [1] "113 out of 1242 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"