[1] "2017-04-06 17:31:06 MDT"
[1] "1411"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1411/141128.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1411/141129.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1411/141130.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1411/141201.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1411/141202.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1411/141203.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1411/141204.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1411/141205.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1411/141206.html"  
[10] "/net/www/docs/homes/stephens/GO2/1411/141207.html"  
[11] "/net/www/docs/homes/stephens/GO2/1411/141208.html"  
[12] "/net/www/docs/homes/stephens/GO2/1411/141209.html"  
[13] "/net/www/docs/homes/stephens/GO2/1411/141210.html"  
[14] "/net/www/docs/homes/stephens/GO2/1411/141211.html"  
[15] "/net/www/docs/homes/stephens/GO2/1411/141212.html"  
[16] "/net/www/docs/homes/stephens/GO2/1411/141213.html"  
[17] "/net/www/docs/homes/stephens/GO2/1411/141214.html"  
[18] "/net/www/docs/homes/stephens/GO2/1411/141215.html"  
[19] "/net/www/docs/homes/stephens/GO2/1411/141216.html"  
[20] "/net/www/docs/homes/stephens/GO2/1411/141217.html"  
[21] "/net/www/docs/homes/stephens/GO2/1411/141218.html"  
[22] "/net/www/docs/homes/stephens/GO2/1411/141219.html"  
[23] "/net/www/docs/homes/stephens/GO2/1411/141220.html"  
[24] "/net/www/docs/homes/stephens/GO2/1411/141221.html"  
[25] "/net/www/docs/homes/stephens/GO2/1411/lmg_1411.html"
 [1] "/net/www/docs/homes/stephens/GO2/1411/141128.html"
 [2] "/net/www/docs/homes/stephens/GO2/1411/141129.html"
 [3] "/net/www/docs/homes/stephens/GO2/1411/141130.html"
 [4] "/net/www/docs/homes/stephens/GO2/1411/141201.html"
 [5] "/net/www/docs/homes/stephens/GO2/1411/141202.html"
 [6] "/net/www/docs/homes/stephens/GO2/1411/141203.html"
 [7] "/net/www/docs/homes/stephens/GO2/1411/141204.html"
 [8] "/net/www/docs/homes/stephens/GO2/1411/141205.html"
 [9] "/net/www/docs/homes/stephens/GO2/1411/141206.html"
[10] "/net/www/docs/homes/stephens/GO2/1411/141207.html"
[11] "/net/www/docs/homes/stephens/GO2/1411/141208.html"
[12] "/net/www/docs/homes/stephens/GO2/1411/141209.html"
[13] "/net/www/docs/homes/stephens/GO2/1411/141210.html"
[14] "/net/www/docs/homes/stephens/GO2/1411/141211.html"
[15] "/net/www/docs/homes/stephens/GO2/1411/141212.html"
[16] "/net/www/docs/homes/stephens/GO2/1411/141213.html"
[17] "/net/www/docs/homes/stephens/GO2/1411/141214.html"
[18] "/net/www/docs/homes/stephens/GO2/1411/141215.html"
[19] "/net/www/docs/homes/stephens/GO2/1411/141216.html"
[20] "/net/www/docs/homes/stephens/GO2/1411/141217.html"
[21] "/net/www/docs/homes/stephens/GO2/1411/141218.html"
[22] "/net/www/docs/homes/stephens/GO2/1411/141219.html"
[23] "/net/www/docs/homes/stephens/GO2/1411/141220.html"
[24] "/net/www/docs/homes/stephens/GO2/1411/141221.html"
[1] "141128" "141221"
 [1] "141128" "141129" "141130" "141201" "141202" "141203" "141204" "141205"
 [9] "141206" "141207" "141208" "141209" "141210" "141211" "141212" "141213"
[17] "141214" "141215" "141216" "141217" "141218" "141219" "141220" "141221"
[1] "000000" "999999"
[1] "141128_mr_proc.txt, 141128_cal_periods.txt, 141128_cal_param.txt,976jogs"
[1] "141129_mr_proc.txt, 141129_cal_periods.txt, 141129_cal_param.txt,1424jogs"
[1] "141130_mr_proc.txt, 141130_cal_periods.txt, 141130_cal_param.txt,1418jogs"
[1] "141201_mr_proc.txt, 141201_cal_periods.txt, 141201_cal_param.txt,1420jogs"
[1] "141202_mr_proc.txt, 141202_cal_periods.txt, 141202_cal_param.txt,1433jogs"
[1] "141203_mr_proc.txt, 141203_cal_periods.txt, 141203_cal_param.txt,1416jogs"
[1] "141204_mr_proc.txt, 141204_cal_periods.txt, 141204_cal_param.txt,1435jogs"
[1] "141205_mr_proc.txt, 141205_cal_periods.txt, 141205_cal_param.txt,1425jogs"
[1] "141206_mr_proc.txt, 141206_cal_periods.txt, 141206_cal_param.txt,1425jogs"
[1] "141207_mr_proc.txt, 141207_cal_periods.txt, 141207_cal_param.txt,1342jogs"
[1] "141208_mr_proc.txt, 141208_cal_periods.txt, 141208_cal_param.txt,1433jogs"
[1] "141209_mr_proc.txt, 141209_cal_periods.txt, 141209_cal_param.txt,1408jogs"
[1] "141210_mr_proc.txt, 141210_cal_periods.txt, 141210_cal_param.txt,1404jogs"
[1] "141211_mr_proc.txt, 141211_cal_periods.txt, 141211_cal_param.txt,1390jogs"
[1] "141212_mr_proc.txt, 141212_cal_periods.txt, 141212_cal_param.txt,1412jogs"
[1] "141213_mr_proc.txt, 141213_cal_periods.txt, 141213_cal_param.txt,1379jogs"
[1] "141214_mr_proc.txt, 141214_cal_periods.txt, 141214_cal_param.txt,1398jogs"
[1] "141215_mr_proc.txt, 141215_cal_periods.txt, 141215_cal_param.txt,1410jogs"
[1] "141216_mr_proc.txt, 141216_cal_periods.txt, 141216_cal_param.txt,1434jogs"
[1] "141217_mr_proc.txt, 141217_cal_periods.txt, 141217_cal_param.txt,1408jogs"
[1] "141218_mr_proc.txt, 141218_cal_periods.txt, 141218_cal_param.txt,1429jogs"
[1] "141219_mr_proc.txt, 141219_cal_periods.txt, 141219_cal_param.txt,1093jogs"
[1] "141220_mr_proc.txt, 141220_cal_periods.txt, 141220_cal_param.txt,109jogs"
[1] "141221_mr_proc.txt, 141221_cal_periods.txt, 141221_cal_param.txt,772jogs"
[1] "141128" "141221" "d332"   "d355"  
[1] "Calculating derived concentration values"
[1] "2017-04-06 17:32:21 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.841, ave o2scale2 = 0.76"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-06 17:32:49 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-06 17:33:31 MDT"
[1] "2017-04-06 17:33:41 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 376.46 O2 = -483.3"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.8 O2 = -548.2"
[1] "position 3 cylinder CC339490 description: LS CO2 = 404.04 O2 = -642.7"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.91 O2 = -579.2"
[1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1411 Valve transient for  Line 1 after Line 2 = 7.57 , 5.7 , 1.97 , 0.04 , -0.11 n = 2"
[1] "1411 Valve transient for  Line 1 after Cal = -0.76 , -0.47 , -0.02 , -0.01 , 0.01 n = 102"
[1] "1411 Valve transient for  Line 2 after Line 1 = 44.06 , 30.59 , 4.13 , -9.08 , -9.34 n = 2"
[1] "1411 Valve transient for  Line 2 after Cal = -12.24 , -11.67 , -11.1 , -11.09 , -11.09 n = 2"
[1] "1411 Valve transient for  Line 1 after HS = -1.17 , -0.61 , 0 , 0 , -0.01 n = 33"
[1] "1411 Valve transient for  Line 1 after MS = -0.05 , -0.02 , 0 , 0 , 0.01 n = 48"
[1] "1411 Valve transient for  Line 1 after LS = -0.12 , -0.1 , -0.07 , -0.03 , 0.01 n = 1"
[1] "1411 Valve transient for  Line 1 after LT = -1.85 , -1.35 , -0.42 , -0.01 , 0.04 n = 20"
[1] "1411 Valve transient for  Line 2 after HS = -12.24 , -11.67 , -11.1 , -11.09 , -11.09 n = 2"
[1] "1411 Valve transient for  HS after Line 1 = 0.98 , 0.49 , 0 , 0 , 0 n = 51"
[1] "1411 Valve transient for  HS after MS = 2.9 , 1.45 , 0 , 0 , 0.01 n = 1"
[1] "1411 Valve transient for  HS after LS = 4.3 , 2.16 , 0.01 , 0 , 0 n = 49"
[1] "1411 Valve transient for  MS after Line 1 = 0 , 0 , 0 , 0 , 0 n = 1"
[1] "1411 Valve transient for  MS after LS = 1.43 , 0.72 , 0.01 , 0 , 0 n = 31"
[1] "1411 Valve transient for  MS after LT = 0.86 , 0.43 , 0.01 , 0.01 , 0 n = 14"
[1] "1411 Valve transient for  LS after Line 1 = -1.29 , -0.65 , 0 , 0 , 0 n = 47"
[1] "1411 Valve transient for  LS after Line 2 = -0.66 , -0.33 , 0 , 0 , 0 n = 2"
[1] "1411 Valve transient for  LS after HS = -4.31 , -2.16 , -0.01 , 0 , 0 n = 49"
[1] "1411 Valve transient for  LT after HS = -0.96 , -0.46 , 0.05 , 0.04 , 0.03 n = 16"
[1] "1411 Valve transient for  LT after LS = 0.64 , 0.34 , 0.04 , 0.04 , 0.03 n = 16"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "640 out of 4026 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "3386 out of 27096 1-min values rejected as stack air"
[1] "3313 out of 26746 Line 1 1-min values rejected as stack air"
[1] "73 out of 350 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1411loxy.d332"
[1] "LMG1411loxy.d333"
[1] "LMG1411loxy.d334"
[1] "LMG1411loxy.d335"
[1] "LMG1411loxy.d336"
[1] "LMG1411loxy.d338"
[1] "LMG1411loxy.d339"
[1] "LMG1411loxy.d340"
[1] "LMG1411loxy.d341"
[1] "LMG1411loxy.d342"
[1] "LMG1411loxy.d343"
[1] "LMG1411loxy.d344"
[1] "LMG1411loxy.d345"
[1] "LMG1411loxy.d346"
[1] "LMG1411loxy.d347"
[1] "LMG1411loxy.d348"
[1] "LMG1411loxy.d349"
[1] "LMG1411loxy.d351"
[1] "LMG1411loxy.d352"
[1] "LMG1411loxy.d353"
[1] "LMG1411loxy.d354"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  97.5 0.1953125
 [2,] 102.5 0.5859375
 [3,] 112.5 0.5859375
 [4,] 117.5 0.5859375
 [5,] 122.5 1.3671875
 [6,] 127.5 2.1484375
 [7,] 132.5 1.1718750
 [8,] 137.5 1.3671875
 [9,] 142.5 0.3906250
[10,] 147.5 0.5859375
[11,] 152.5 0.3906250
[12,] 162.5 0.0000000
[13,] 167.5 0.1953125
[14,] 172.5 0.3906250
[15,] 177.5 0.1953125
[16,] 182.5 0.3906250
[17,] 187.5 0.3906250
[18,] 192.5 0.3906250
[19,] 197.5 0.3906250
[20,] 207.5 0.3906250
[21,] 212.5 0.5859375
[22,] 217.5 0.9765625
[23,] 222.5 0.3906250
[24,] 227.5 1.3671875
[25,] 232.5 0.5859375
[26,] 237.5 1.1718750
[27,] 242.5 1.5625000
[28,] 247.5 1.5625000
[29,] 252.5 0.9765625
[30,] 257.5 0.5859375
[31,] 262.5 1.3671875
[32,] 267.5 3.1250000
[33,] 272.5 1.9531250
[34,] 277.5 2.1484375
[35,] 282.5 0.9765625
[36,] 287.5 0.5859375
[37,] 292.5 0.5859375
[38,] 297.5 0.7812500
[39,] 302.5 3.5156250
[40,] 307.5 2.9296875
[41,] 312.5 2.1484375
[42,] 317.5 2.1484375
[43,] 322.5 1.7578125
[44,] 327.5 1.9531250
[45,] 332.5 0.7812500
[46,] 337.5 0.5859375
[47,] 342.5 0.5859375
[48,] 347.5 0.5859375
[49,] 357.5 0.1953125
[50,] 362.5 0.1953125
[51,] 367.5 0.1953125
[52,] 382.5 0.5859375
[53,] 392.5 0.3906250
[54,] 397.5 0.1953125
[55,] 407.5 0.1953125
[56,] 412.5 0.3906250
[57,] 417.5 0.1953125
[58,] 437.5 0.1953125
[59,] 442.5 0.1953125
[60,] 447.5 0.1953125
       [,1]      [,2]
 [1,] 122.5 0.3906250
 [2,] 132.5 0.1953125
 [3,] 137.5 0.1953125
 [4,] 197.5 0.1953125
 [5,] 202.5 0.3906250
 [6,] 207.5 2.1484375
 [7,] 212.5 2.7343750
 [8,] 217.5 5.6640625
 [9,] 222.5 4.2968750
[10,] 227.5 4.4921875
[11,] 232.5 1.9531250
[12,] 237.5 0.0000000
[13,] 247.5 0.3906250
[14,] 257.5 0.1953125
[15,] 267.5 0.3906250
[16,] 272.5 0.1953125
[17,] 277.5 0.7812500
[18,] 287.5 0.1953125
[19,] 292.5 0.1953125
[20,] 297.5 0.1953125
[21,] 302.5 0.3906250
[22,] 307.5 0.1953125
[23,] 312.5 0.3906250
[24,] 317.5 0.1953125
[25,] 322.5 0.5859375
[26,] 327.5 1.1718750
[27,] 332.5 1.9531250
[28,] 337.5 1.5625000
[29,] 342.5 0.5859375
[30,] 347.5 0.3906250
[31,] 352.5 0.1953125
      [,1]      [,2]
[1,] 202.5 0.3906250
[2,] 207.5 4.1015625
[3,] 212.5 6.2500000
[4,] 217.5 1.5625000
[5,] 222.5 0.1953125
[6,] 327.5 0.1953125
[7,] 332.5 0.5859375
[8,] 337.5 0.3906250
     [,1] [,2]
[1] "making cruise html"
[1] "2017-04-06 17:34:35 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"