[1] "2025-04-29 22:28:45 MDT"
[1] "1410"   "141122" "d326"  
[1] "No HR file found"
[1] "Parsing MR flags"
[1] "Calculating derived concentration values"
[1] "2025-04-29 22:28:45 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.828, ave o2scale2 = 0.747"
[1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000"
[1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000"
[1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000"
[1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000"
[1] "10 MR delta diff NA values ( most likely because WTDIFF > 200 )"
[1] "2025-04-29 22:28:45 MDT"
[1] "Plotting 1-minute data"
[1] "2025-04-29 22:28:45 MDT"
[1] "reading in medium-rate plot titles"
[1] "Removed 10 row(s) with NAs in them ( most likely because WTDIFF > 200 )"
[1] "TEMP: 307 0 TRUE"
[1] "Plotting O2 and CO2 concentration data"
[1] "2025-04-29 22:28:46 MDT"
[1] "Reading in cylinder log"
Read 78 records
[1] "Finding cylinder IDs"
Read 536 records
[1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.3"
[1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.3"
[1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.9"
[1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2"
[1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA"
[1] "Nominal linear calibrations:"
[1] "co2scl = 0.947  co2off = 395.58 o2scla = 1  o2offa = 0"
[1] "Finding cal and sample periods"
[1] "Plotting MR jog shapes"
[1] "Median Cal: 9.01 minutes"
[1] "Average Cal: 9.02 minutes"
[1] "Shortest Cal: 9.01 minutes"
[1] "Longest Cal: 9.02 minutes"
[1] "Plotting calibration sds and slopes"
[1] "cbind(calstart,calend)"
     calstart calend
[1,]        1      2
[1] "calperiods"
  type posi pose     timei     timee     timea grp    co2sig    o2sig    jfcv1
2    4  217  226 0.1531412 0.1594005 0.1569666   2   3.44800 400.7525 1.208906
3    2  227  236 0.1600961 0.1663588 0.1639236   2 -25.76209 511.8950 1.209092
4    5  237  246 0.1670544 0.1733137 0.1722703  NA  -7.37200 442.0491 1.209240
     jfcv2        co2slp      o2slp       co2sd     o2sd
2 1.341008  0.0001726124  0.7113973 0.003950588  7.51110
3 1.341373 -0.0050572921 -6.8148577 0.013761318 27.19416
4 1.341659  0.0029950083 -4.9950793 0.002121320 13.28855
[1] "Plotting calibration fits"
[1] "Average calibration parameters:"
[1] "co2l0 = 400.975  co2l1 = 0.945 co2l0 = 0"
[1] "co2l0 = -228.64  co2l1 = 0.287"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "20 out of 20 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "0 out of 255 1-min values rejected as stack air"
[1] "0 out of 255 Line 1 1-min values rejected as stack air"
[1] "0 out of 0 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "making html"