[1] "2025-04-29 22:28:39 MDT" [1] "1410" "141121" "d325" [1] "No HR file found" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:28:39 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.837, ave o2scale2 = 0.754" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 3 MR FC 2 jog(s) with SP SD > 1000" [1] "168 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:28:39 MDT" [1] "Plotting 1-minute data" [1] "2025-04-29 22:28:39 MDT" [1] "reading in medium-rate plot titles" [1] "Removed 168 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1269 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:28:41 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 402.42 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 7.66 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 129 135 0.1093414 0.1135162 0.1121231 2 -25.950750 525.0624 4 3 138 142 0.1246458 0.1274282 0.1295166 2 -6.535917 443.2786 6 4 364 373 0.3180671 0.3243264 0.3218924 2 3.291156 384.3622 7 2 374 383 0.3250220 0.3312847 0.3288504 2 -25.912156 528.5501 9 2 658 667 0.5268333 0.5330972 0.5306625 3 -25.945531 529.3727 10 4 668 677 0.5337928 0.5400556 0.5376204 3 3.277094 383.7854 11 5 678 687 0.5407512 0.5470139 0.5459705 NA -7.537875 430.7833 12 3 688 696 0.5477095 0.5539722 0.5532766 3 -6.508721 428.1385 14 4 916 925 0.7356088 0.7418727 0.7394359 2 3.295125 379.7954 15 2 926 934 0.7425671 0.7481319 0.7460451 2 -25.924321 527.6588 17 2 1198 1205 0.9443669 0.9492384 0.9474996 2 -25.850708 525.5587 18 4 1206 1215 0.9513252 0.9575880 0.9551531 2 3.342844 390.4933 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.191545 1.324565 0.0014216489 3.8971340 0.0023452079 6.646931 4 1.191302 1.324110 -0.0008725759 -1.7780729 0.0010103630 7.740563 6 1.192428 1.325968 -0.0002822537 -0.8568126 0.0018319462 5.503082 7 1.192758 1.326339 -0.0013170492 -0.5042198 0.0076133547 2.397655 9 1.193414 1.326736 -0.0018926078 -1.1857463 0.0063392731 16.165830 10 1.193537 1.326729 0.0013114118 -0.5546962 0.0098115616 10.274574 11 1.193745 1.326716 0.0007487521 8.8515786 0.0005303301 13.951066 12 1.194316 1.326589 0.0007203278 -5.5886865 0.0027572415 10.951733 14 1.197659 1.327495 0.0009314408 -0.1102949 0.0045610932 4.234420 15 1.197705 1.327483 -0.0062663418 -3.2821919 0.0140488095 8.531130 17 1.203086 1.334111 -0.0014053831 -1.0799695 0.0032070885 6.244792 18 1.202935 1.333907 0.0018456667 5.6357449 0.0082634495 18.473289 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.126 co2l1 = 0.945 co2l0 = 0" [1] "co2l0 = -192.8 co2l1 = 0.211" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "54 out of 70 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "16 out of 1110 1-min values rejected as stack air" [1] "16 out of 1110 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"