[1] "2025-04-29 22:28:32 MDT" [1] "1410" "141120" "d324" [1] "No HR file found" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:28:32 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.843, ave o2scale2 = 0.76" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "139 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:28:33 MDT" [1] "Plotting 1-minute data" [1] "2025-04-29 22:28:33 MDT" [1] "reading in medium-rate plot titles" [1] "Removed 139 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1298 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:28:34 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 400.17 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.37 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 95 104 0.06545602 0.07171875 0.06928516 2 3.279625 379.1286 3 2 105 114 0.07241782 0.07867708 0.07624334 2 -25.930344 528.4733 5 2 388 397 0.27423264 0.28049653 0.27805946 3 -26.031500 525.8149 6 4 398 407 0.28119097 0.28745370 0.28501823 3 3.195281 384.4513 7 5 408 417 0.28814931 0.29441667 0.29337326 NA -7.848375 441.2589 8 3 418 426 0.29511227 0.30067940 0.29998380 3 -6.610286 459.2029 10 4 670 679 0.48299190 0.48925116 0.48681684 2 3.166313 383.0803 11 2 680 687 0.48994907 0.49620949 0.49354321 2 -26.064292 530.1785 13 2 938 947 0.69182755 0.69809028 0.69565639 3 -25.987875 533.0234 14 4 948 957 0.69878588 0.70504861 0.70261429 3 3.225312 379.5558 15 3 958 967 0.70574421 0.71200694 0.71096354 3 -6.574969 463.9912 17 4 1195 1200 0.90194560 0.90542477 0.90438137 2 3.251687 380.0866 18 2 1201 1207 0.90751157 0.91168750 0.91029560 2 -25.967000 524.8255 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.190208 1.320781 0.0024011149 -1.3374376 0.0061687577 4.7945491 3 1.190210 1.320800 -0.0030168528 0.2750247 0.0099525100 2.0246288 5 1.183705 1.313530 -0.0016213619 1.1480367 0.0048605555 4.9977677 6 1.183353 1.313162 0.0014040669 1.9960428 0.0086534856 19.3631427 7 1.182998 1.312785 -0.0002495840 -1.3734529 0.0001767767 5.1724778 8 1.182874 1.312480 -0.0020572989 0.1651067 0.0066839805 0.4553077 10 1.183082 1.312885 -0.0004695058 0.2665533 0.0014062996 3.7676344 11 1.182866 1.312661 -0.0053913962 -1.8638736 0.0174459284 7.0733689 13 1.188331 1.318697 -0.0007312850 2.0188973 0.0029790938 9.7683149 14 1.188100 1.318538 0.0008928447 1.0562957 0.0061262754 3.0855722 15 1.188221 1.318700 -0.0004670608 0.1254182 0.0037211689 0.6020116 17 1.188928 1.319365 0.0015723794 -0.2658016 0.0022672946 0.5772186 18 1.189031 1.319331 -0.0070099622 6.7439414 0.0136461991 12.5537363 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.192 co2l1 = 0.945 co2l0 = 0.001" [1] "co2l0 = -196.3 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1120 1-min values rejected as stack air" [1] "0 out of 1120 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"