[1] "2025-04-29 22:28:26 MDT" [1] "1410" "141119" "d323" [1] "No HR file found" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:28:26 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.846, ave o2scale2 = 0.762" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "71 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:28:26 MDT" [1] "Plotting 1-minute data" [1] "2025-04-29 22:28:26 MDT" [1] "reading in medium-rate plot titles" [1] "Removed 71 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1366 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:28:28 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 401.36 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.48 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 32 41 0.02174421 0.02800694 0.02557306 3 -26.208500 531.1983 3 4 42 51 0.02870370 0.03496875 0.03253168 3 3.035281 378.7092 4 5 52 61 0.03566435 0.04192361 0.04088021 NA -7.965875 458.3766 5 3 62 71 0.04261921 0.04888426 0.04783912 3 -6.771844 442.8870 7 4 329 338 0.23048264 0.23674537 0.23431149 2 3.117562 379.8915 8 2 339 348 0.23744097 0.24370602 0.24127025 2 -26.123656 528.9411 12 2 622 631 0.43926273 0.44552199 0.44308753 3 -26.037969 527.5757 13 4 632 641 0.44621759 0.45248148 0.45004514 3 3.198937 380.9297 14 3 642 650 0.45317708 0.45943981 0.45874421 3 -6.590564 459.9444 16 4 900 907 0.64800000 0.65426273 0.65229186 2 3.233583 380.3674 17 2 908 913 0.65774074 0.66122106 0.66017824 2 -25.996750 528.6402 18 5 914 923 0.66191667 0.66817940 0.66713686 NA -7.746250 441.9204 20 2 1168 1175 0.85811690 0.86298495 0.86124595 3 -25.930833 530.5153 21 4 1176 1183 0.86507176 0.86993981 0.86820120 3 3.284917 383.3133 22 3 1184 1193 0.87063542 0.87689815 0.87585214 3 -6.512000 454.9770 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.169518 1.297573 0.0001547644 4.3645236 0.0048218254 12.0400061 3 1.169615 1.297771 0.0016180656 -2.2555502 0.0070779304 7.1733778 4 1.169921 1.298137 -0.0012479201 14.8967304 0.0008838835 21.8469489 5 1.170026 1.298404 -0.0003887249 -10.3329776 0.0013623607 14.6086252 7 1.177186 1.306034 0.0022582891 0.6584099 0.0063944032 4.8965240 8 1.177412 1.306266 -0.0039960183 -0.4252317 0.0120363568 2.0044747 12 1.183291 1.312839 0.0003119961 1.1408973 0.0031408526 4.7303736 13 1.183489 1.313050 0.0021314775 0.8968588 0.0063565911 2.9351618 14 1.183745 1.313525 0.0001558944 2.6303694 0.0014984615 2.8289374 16 1.187383 1.317494 -0.0004316559 -0.1600452 0.0019790570 2.1758153 17 1.187334 1.317369 -0.0020479019 0.1993364 0.0027913557 0.3258503 18 1.187769 1.317853 -0.0075000000 -0.9969064 0.0053033009 1.4594093 20 1.191287 1.321915 0.0006417875 4.0046846 0.0015383974 7.9161353 21 1.190948 1.321565 -0.0003994563 1.6077189 0.0014023789 3.2344725 22 1.190951 1.321544 0.0008382864 -0.3056344 0.0034692527 0.9578876 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.239 co2l1 = 0.944 co2l0 = 0" [1] "co2l0 = -194.64 co2l1 = 0.214" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "48 out of 150 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "102 out of 1166 1-min values rejected as stack air" [1] "82 out of 991 Line 1 1-min values rejected as stack air" [1] "20 out of 175 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"