[1] "2025-04-29 22:28:19 MDT" [1] "1410" "141118" "d322" [1] "No HR file found" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:28:19 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.863, ave o2scale2 = 0.778" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "7 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:28:20 MDT" [1] "Plotting 1-minute data" [1] "2025-04-29 22:28:20 MDT" [1] "reading in medium-rate plot titles" [1] "Removed 7 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1430 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:28:21 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 402.5 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 2 269 278 0.1866817 0.1929444 0.1905080 3 -26.360813 527.1936 4 4 279 288 0.1936400 0.1999028 0.1974672 3 2.882062 375.9526 5 3 289 298 0.2005984 0.2068611 0.2058177 3 -6.912688 461.0767 8 4 569 578 0.3954444 0.4017072 0.3992736 2 2.905250 380.1172 9 2 579 588 0.4024063 0.4086690 0.4062326 2 -26.343438 527.1769 10 5 589 598 0.4093646 0.4156273 0.4145833 NA -8.088750 443.7619 14 2 866 875 0.6042130 0.6104769 0.6080404 3 -26.311531 525.3354 15 4 876 885 0.6111713 0.6174340 0.6149990 3 2.930250 379.2318 16 3 886 895 0.6181296 0.6243924 0.6233498 3 -6.858406 460.5789 18 4 1164 1171 0.8129815 0.8192442 0.8165770 2 2.968083 387.8160 19 2 1172 1181 0.8199387 0.8261991 0.8237645 2 -26.292437 527.2155 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.155573 1.282141 -1.573078e-03 0.23240925 0.004519304 2.004205 4 1.155602 1.282173 4.091812e-03 0.51800118 0.012169744 3.442366 5 1.155687 1.282265 -7.723193e-05 2.95475280 0.002043063 3.916243 8 1.156486 1.283243 6.359126e-04 0.35976538 0.002259899 3.950747 9 1.156630 1.283417 -2.790952e-03 0.25207131 0.009901073 1.332084 10 1.156612 1.283407 -5.490849e-03 1.48324103 0.003889087 2.043225 14 1.159591 1.286792 -4.657790e-03 0.56657590 0.011576946 3.018422 15 1.159761 1.286991 3.575077e-03 0.01514974 0.010697129 2.171191 16 1.159924 1.287192 -8.468223e-04 0.04571431 0.002329690 1.760946 18 1.162262 1.289726 1.559028e-03 0.66117137 0.004794963 4.102465 19 1.162685 1.290196 -6.483242e-03 0.98376951 0.017689156 4.168756 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.477 co2l1 = 0.944 co2l0 = 0" [1] "co2l0 = -196.98 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "121 out of 255 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "134 out of 1267 1-min values rejected as stack air" [1] "74 out of 945 Line 1 1-min values rejected as stack air" [1] "60 out of 322 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"