[1] "2025-04-29 22:28:13 MDT" [1] "1410" "141117" "d321" [1] "No HR file found" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:28:13 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.86, ave o2scale2 = 0.775" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "109 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:28:13 MDT" [1] "Plotting 1-minute data" [1] "2025-04-29 22:28:13 MDT" [1] "reading in medium-rate plot titles" [1] "Removed 109 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 2 row(s) with LiCO2A spikes in them" [1] "TEMP: 1323 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:28:15 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 402.5 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.94 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 5 [3,] 6 7 [4,] 8 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 193 202 0.1431505 0.1494132 0.1469783 2 3.078281 379.1400 3 2 203 212 0.1501076 0.1563704 0.1539359 2 -26.173969 528.5733 4 5 213 222 0.1570660 0.1633287 0.1622862 NA -7.927625 446.3552 7 2 467 473 0.3518912 0.3581505 0.3559255 2 -26.274462 521.8500 8 3 474 482 0.3665000 0.3720671 0.3713719 2 -6.830679 460.1501 11 4 699 708 0.5606690 0.5669317 0.5644958 2 2.971625 378.4621 12 2 709 718 0.5676273 0.5738900 0.5714541 2 -26.261375 526.6096 14 2 998 1007 0.7693958 0.7756586 0.7732229 3 -26.275562 530.4163 15 4 1008 1017 0.7763530 0.7826157 0.7801801 3 2.971719 381.8790 16 5 1018 1027 0.7833113 0.7895741 0.7885298 NA -8.028625 438.3532 17 3 1028 1037 0.7902697 0.7965324 0.7954896 3 -6.818094 465.9869 19 4 1292 1301 0.9779456 0.9842049 0.9817705 2 2.959781 381.1628 20 2 1302 1311 0.9849005 0.9911632 0.9887286 2 -26.291406 529.7852 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.171458 1.299931 2.093959e-03 -0.57951523 0.006216966 4.5864401 3 1.171317 1.299769 -1.933844e-03 -1.00146646 0.007361140 3.3336983 4 1.170795 1.299195 -4.750000e-03 1.47670160 0.003358757 2.5471325 7 1.164882 1.292749 -1.258449e-03 0.71094001 0.004646771 3.4011801 8 1.164326 1.292164 6.325789e-04 1.42798734 0.002149197 1.8824488 11 1.160746 1.287950 -3.745238e-04 -0.78451061 0.002179449 2.7833127 12 1.160686 1.287908 -3.129279e-03 0.78701610 0.010418048 3.6957595 14 1.158438 1.285316 -9.616273e-04 0.43670933 0.003846961 2.7869123 15 1.158242 1.285086 2.757492e-03 0.09418092 0.009672713 1.5265848 16 1.158200 1.285043 -4.742097e-03 0.38592306 0.003358757 1.0067902 17 1.158184 1.285022 -2.882660e-03 -0.32530471 0.007153842 0.9889229 19 1.156584 1.283296 1.275067e-03 -0.40580586 0.003523993 2.4917208 20 1.156705 1.283444 -8.616591e-05 0.39466698 0.006690795 2.7033460 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.414 co2l1 = 0.944 co2l0 = 0" [1] "co2l0 = -196.94 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "26 out of 320 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "294 out of 1141 1-min values rejected as stack air" [1] "269 out of 549 Line 1 1-min values rejected as stack air" [1] "25 out of 592 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"