[1] "2025-04-29 22:28:07 MDT" [1] "1410" "141116" "d320" [1] "No HR file found" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:28:07 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.852, ave o2scale2 = 0.767" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "16 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:28:07 MDT" [1] "Plotting 1-minute data" [1] "2025-04-29 22:28:07 MDT" [1] "reading in medium-rate plot titles" [1] "Removed 16 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 5 row(s) with variable TFCELL" [1] "TEMP: 1401 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:28:09 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 401.3 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.61 minutes" [1] "Shortest Cal: 2.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 10 [5,] 12 13 [6,] 14 16 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 5 14 0.002863426 0.009126157 0.006690972 2 3.091406 384.0668 3 2 15 24 0.009821759 0.016091435 0.013652922 2 -26.146844 526.2308 5 2 305 314 0.211643519 0.217906250 0.215471209 3 -26.153312 526.9383 6 4 315 324 0.218601852 0.224864583 0.222428819 3 3.093500 381.6561 7 3 325 334 0.225560185 0.231822917 0.230779514 3 -6.709500 463.2018 9 4 604 613 0.420458333 0.426722222 0.424286458 2 3.123875 384.9618 10 2 614 623 0.427417824 0.433680556 0.431246094 2 -26.109625 528.1870 11 5 624 633 0.434376157 0.440635417 0.439592014 NA -7.887750 445.4916 14 2 719 728 0.523665509 0.529930556 0.527497251 2 -26.093719 512.4426 15 4 729 738 0.530629630 0.536890046 0.534455440 2 3.130219 382.4285 16 5 739 748 0.537584491 0.543848380 0.542804977 NA -8.538750 437.0146 18 4 1009 1018 0.725518519 0.731781250 0.729346065 2 3.160250 383.2262 19 2 1019 1028 0.732476852 0.738739583 0.736304109 2 -26.069188 525.2995 21 2 1309 1318 0.934281250 0.940543981 0.938109230 3 -26.107594 530.7988 22 4 1319 1328 0.941239583 0.947502315 0.945067998 3 3.117938 384.5079 23 3 1329 1338 0.948197917 0.954462963 0.953418113 3 -6.698937 460.0184 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.170392 1.298708 -0.0003770229 -1.50995646 0.003270369 8.244821 3 1.170493 1.298757 -0.0021837327 2.67375290 0.010077324 7.636903 5 1.170773 1.299073 -0.0018108597 -1.20862270 0.004597651 5.130561 6 1.170804 1.299110 0.0029208215 1.41458873 0.010806744 5.558398 7 1.171050 1.299375 -0.0021080353 2.00564779 0.005457629 3.421765 9 1.173900 1.302608 0.0001189481 0.59706201 0.002503569 2.768449 10 1.174102 1.302847 -0.0027517683 0.69003646 0.009132947 2.679154 11 1.174230 1.302979 -0.0034941764 0.18357597 0.002474874 3.169402 14 1.175943 1.305176 -0.0036349998 4.84976235 0.009364101 19.972619 15 1.176309 1.305629 0.0001574756 1.52573081 0.008073809 5.167640 16 1.176709 1.306094 -0.0134775374 -5.45614742 0.009545942 7.455488 18 1.178431 1.307838 -0.0001247919 1.20169100 0.001552648 4.923836 19 1.178466 1.307888 -0.0004689077 0.06700361 0.008305280 3.535820 21 1.176760 1.305939 -0.0027051949 0.04646587 0.006862082 4.425063 22 1.176406 1.305549 0.0001380630 0.16056862 0.005654881 2.337295 23 1.176266 1.305381 -0.0034226629 -3.33138508 0.010539678 4.516965 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.291 co2l1 = 0.944 co2l0 = 0" [1] "co2l0 = -200.16 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "110 out of 290 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "180 out of 1166 1-min values rejected as stack air" [1] "180 out of 1166 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"