[1] "2025-04-29 22:27:30 MDT" [1] "1410" "141115" "d319" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141115a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:27:34 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.769" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.769" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:27:34 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:27:34 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:27:55 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:27:57 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1434 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:28:02 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 401.28 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 239 248 0.1679803 0.1742396 0.1718054 2 3.181617 382.1424 3 2 249 258 0.1749387 0.1811978 0.1787636 2 -26.060328 524.6439 4 5 259 268 0.1818931 0.1881557 0.1871127 NA -7.842312 441.3942 6 2 539 548 0.3767407 0.3830038 0.3805664 3 -26.088258 529.0960 7 4 549 558 0.3836992 0.3899629 0.3875261 3 3.147227 380.7275 8 3 559 568 0.3906583 0.3969213 0.3958780 3 -6.648367 456.9251 10 4 839 848 0.5855015 0.5917648 0.5893290 2 3.126961 377.5417 11 2 849 858 0.5924605 0.5987193 0.5962852 2 -26.104922 534.2120 13 2 1139 1148 0.7942454 0.8005047 0.7980705 3 -26.126016 525.0718 14 4 1149 1158 0.8012003 0.8074599 0.8050258 3 3.110703 378.5706 15 5 1159 1168 0.8081596 0.8144228 0.8133780 NA -7.898250 440.5594 16 3 1169 1178 0.8151181 0.8213784 0.8203346 3 -6.685211 459.6863 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.175061 1.303760 1.021690e-03 -0.7705387 0.0032433719 3.107252 3 1.174997 1.303678 -1.842636e-03 -1.2329665 0.0055114279 3.666679 4 1.174851 1.303515 -3.620625e-03 0.7018425 0.0025632621 1.387434 6 1.173392 1.301871 -1.530464e-03 0.7104758 0.0039922410 3.400145 7 1.173216 1.301669 2.337314e-03 0.1476128 0.0083566522 1.989876 8 1.173180 1.301645 3.676277e-04 -3.3256730 0.0034042118 4.623933 10 1.171692 1.299984 1.340844e-03 0.2182507 0.0037712105 2.044864 11 1.171853 1.300152 -2.583948e-03 1.4616615 0.0073260139 5.922037 13 1.171617 1.300089 2.379551e-05 -1.1052345 0.0018548771 3.347517 14 1.171503 1.299961 -3.950668e-04 -1.0814043 0.0076760404 3.347280 15 1.171612 1.300073 7.488767e-04 0.3551489 0.0005303301 1.347440 16 1.171579 1.300038 1.151283e-04 -0.4379015 0.0015381813 1.156984 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.269 co2l1 = 0.944 co2l0 = 0" [1] "co2l0 = -195.23 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "197 out of 295 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "98 out of 1267 1-min values rejected as stack air" [1] "98 out of 1267 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"