[1] "2025-04-29 22:25:36 MDT" [1] "1410" "141112" "d316" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141112a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:25:40 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.768" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "180 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.768" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "182 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:25:41 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:25:41 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:26:03 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:26:04 MDT" [1] "reading in recalculated plot titles" [1] "Removed 183 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1253 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:26:11 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.3" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 411.75 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.42 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 33 42 0.03648119 0.04274774 0.04031043 3 -26.087305 527.9819 3 4 43 52 0.04344329 0.04970602 0.04726928 3 3.163469 383.2767 5 3 61 69 0.05735648 0.06361933 0.06292353 3 -6.642759 466.1225 7 4 282 289 0.24662633 0.25149881 0.24975998 2 3.159885 379.8021 8 2 290 299 0.25219421 0.25845709 0.25602280 2 -26.083680 531.0067 10 2 549 556 0.45541829 0.46029051 0.45855000 3 -26.114313 529.4804 11 4 557 564 0.46168166 0.46655350 0.46481183 3 3.135823 383.5718 12 3 565 573 0.46864005 0.47420752 0.47351212 3 -6.672384 463.5073 14 4 808 813 0.66276852 0.66902778 0.66659368 2 3.142062 377.6351 15 2 814 823 0.66972581 0.67598611 0.67355204 2 -26.099367 525.4346 16 5 824 833 0.67668174 0.68294129 0.68189830 NA -7.895625 441.6782 18 2 1080 1089 0.87152572 0.87778869 0.87535188 3 -26.128836 522.7972 19 4 1090 1099 0.87848397 0.88475171 0.88231761 3 3.118984 381.8903 20 3 1100 1109 0.88544708 0.89171042 0.89066716 3 -6.687188 457.4997 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.173608 1.303844 -0.0013240472 -0.11559408 0.004045147 2.895128 3 1.173485 1.303710 0.0010971304 0.01791680 0.004263634 4.893088 5 1.173248 1.303201 -0.0028244921 3.46835626 0.007177682 3.597903 7 1.172586 1.302625 0.0028081526 2.58751067 0.006009162 7.399249 8 1.172647 1.302693 -0.0019843266 1.08652820 0.005841129 3.763421 10 1.172444 1.302521 -0.0015421776 -2.08215343 0.003695014 4.489323 11 1.172348 1.302365 0.0001262404 -2.95403006 0.001867241 7.136352 12 1.172325 1.302146 -0.0035444251 -1.53625904 0.007731785 2.223395 14 1.172467 1.302567 0.0008990475 -0.00283383 0.003364567 2.190765 15 1.172623 1.302756 0.0014941513 2.29503910 0.007947753 5.907586 16 1.172411 1.302521 -0.0072403462 1.24785767 0.005126524 1.616551 18 1.172397 1.302505 -0.0015234984 -2.07205681 0.005059130 10.381402 19 1.172335 1.302468 0.0034085021 0.02925033 0.009568990 3.058735 20 1.172477 1.302651 0.0002543144 -3.51866354 0.004918873 4.889331 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.269 co2l1 = 0.944 co2l0 = 0" [1] "co2l0 = -196.92 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "49 out of 150 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "101 out of 1060 1-min values rejected as stack air" [1] "101 out of 1060 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"