[1] "2025-04-29 22:24:24 MDT" [1] "1410" "141110" "d314" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141110a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:24:28 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.76" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "362 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.76" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "361 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:24:29 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:24:29 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:24:50 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:24:51 MDT" [1] "reading in recalculated plot titles" [1] "Removed 361 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1075 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:24:55 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 388.65 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.01 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 11 [5,] 12 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 227 236 0.1579319 0.1641910 0.1617570 2 3.440172 380.1465 3 2 237 246 0.1648866 0.1711459 0.1687117 2 -25.793484 528.4040 4 5 247 256 0.1718414 0.1781041 0.1770608 NA -7.624875 445.9368 6 2 527 536 0.3667169 0.3729766 0.3705423 3 -25.844781 531.9068 7 4 537 546 0.3736721 0.3799317 0.3774975 3 3.387703 381.6812 8 3 547 556 0.3806273 0.3868901 0.3858470 3 -6.423945 455.2751 10 4 768 777 0.5754522 0.5817153 0.5792778 2 3.337234 386.5661 11 2 778 786 0.5824109 0.5886701 0.5860868 2 -25.919251 531.2288 13 2 950 956 0.7848936 0.7904582 0.7890671 3 -25.997488 525.3356 14 4 957 962 0.7918490 0.7953299 0.7942858 3 3.242328 382.1744 16 3 972 975 0.8057697 0.8092467 0.8149881 3 -6.562156 435.0899 18 4 1070 1075 0.9957537 0.9992350 0.9981905 1 3.169141 386.3802 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.193703 1.326320 -0.0005557632 1.2580974 0.0019091386 3.8375134 3 1.193711 1.326321 -0.0031369691 0.2849953 0.0092584270 1.1824356 4 1.193414 1.325986 -0.0009983776 1.0228422 0.0007071068 1.3299945 6 1.188544 1.320584 -0.0008721057 -1.1103833 0.0043865918 5.2484793 7 1.188095 1.320136 0.0003925334 -2.1787454 0.0043432200 11.8121182 8 1.187636 1.319647 -0.0017571989 -5.4723329 0.0046854683 7.7492502 10 1.182941 1.314282 -0.0002880454 -0.5546182 0.0009715541 2.8153947 11 1.182587 1.313819 -0.0036531528 -0.8015909 0.0104422665 3.7371748 13 1.176137 1.306871 -0.0022400017 -0.2160256 0.0045234631 0.6465688 14 1.176055 1.306644 -0.0012159050 3.1718185 0.0018052116 4.1395759 16 1.174029 1.304223 -0.0034330656 -1.8031354 0.0024306796 11.5743105 18 1.169468 1.299268 0.0001679208 3.0935097 0.0005087131 5.1914519 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 401.107 co2l1 = 0.944 co2l0 = 0.001" [1] "co2l0 = -195.35 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "122 out of 257 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "135 out of 917 1-min values rejected as stack air" [1] "135 out of 917 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"