[1] "2025-04-29 22:23:20 MDT" [1] "1410" "141108" "d312" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141108a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:23:24 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.761" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.761" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:23:25 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:23:25 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:23:44 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:23:46 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1435 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:23:54 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 400.95 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 118 127 0.08254071 0.08880365 0.08636936 3 -25.842367 530.2895 3 4 128 137 0.08949899 0.09576510 0.09332844 3 3.400437 385.4387 4 5 138 147 0.09646152 0.10272431 0.10167964 NA -7.589250 446.2033 5 3 148 157 0.10341970 0.10967937 0.10863579 3 -6.373594 456.5260 7 4 418 427 0.29129994 0.29756299 0.29512582 2 3.442281 385.7467 8 2 428 437 0.29825830 0.30452529 0.30208916 2 -25.779828 526.9376 10 2 718 727 0.50014239 0.50640532 0.50397093 3 -25.782664 529.9011 11 4 728 737 0.50710075 0.51336415 0.51092964 3 3.454937 380.8258 12 3 738 747 0.51405943 0.52032266 0.51927945 3 -6.341555 461.5432 14 4 1018 1027 0.70890628 0.71516973 0.71273363 2 3.457320 383.5368 15 2 1028 1037 0.71586510 0.72212841 0.71969297 2 -25.762930 529.3153 16 5 1038 1047 0.72282387 0.72908683 0.72804348 NA -7.605781 446.6045 18 2 1318 1327 0.91768704 0.92395391 0.92151650 3 -25.736031 530.5914 19 4 1328 1337 0.92464936 0.93091253 0.92847612 3 3.490969 380.5898 20 3 1338 1347 0.93160784 0.93787057 0.93682758 3 -6.303109 462.2407 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.180156 1.310623 0.0007625672 0.73224133 0.002825158 3.3677935 3 1.180182 1.310661 0.0002028972 0.59834292 0.005532574 2.1318513 4 1.180390 1.310881 0.0019972538 1.16761456 0.001414214 1.7378158 5 1.180559 1.311061 -0.0014931554 -0.34316638 0.005928329 2.3835155 7 1.182393 1.313094 0.0029674759 1.14990333 0.007426650 5.5207787 8 1.182602 1.313322 -0.0017511099 0.28496925 0.006825696 4.2973629 10 1.184415 1.315101 -0.0023402415 -0.71974267 0.006280456 5.9806335 11 1.184337 1.315014 0.0033945638 -1.03158105 0.009461093 2.7232911 12 1.184416 1.315121 -0.0017481303 -6.18822153 0.004378498 8.1104362 14 1.186296 1.317319 0.0027495572 -0.24895735 0.007153018 1.3852031 15 1.186439 1.317488 -0.0026292977 0.83981147 0.008359490 2.5948593 16 1.186350 1.317385 -0.0034316376 0.03948649 0.002430680 0.4852863 18 1.188207 1.319476 0.0018060760 0.58975946 0.006224053 3.6383199 19 1.188164 1.319418 0.0027888990 -0.80013692 0.007328851 3.0903146 20 1.188316 1.319604 -0.0017134310 -1.52561278 0.004723936 2.2161813 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.976 co2l1 = 0.944 co2l0 = 0" [1] "co2l0 = -197.17 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "80 out of 198 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "118 out of 1228 1-min values rejected as stack air" [1] "118 out of 1228 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"