[1] "2025-04-29 22:22:02 MDT" [1] "1410" "141106" "d310" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/141106a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-29 22:22:06 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.847, ave o2scale2 = 0.762" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "30 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.847, ave o2scale2 = 0.762" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "31 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-29 22:22:06 MDT" [1] "Plotting 1-second data" [1] "2025-04-29 22:22:06 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-29 22:22:27 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-29 22:22:29 MDT" [1] "reading in recalculated plot titles" [1] "Removed 31 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1405 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-29 22:22:36 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CC339495 description: HS CO2 = 376.63 O2 = -477.2" [1] "position 2 cylinder CB08905 description: MS CO2 = 394.99 O2 = -541.4" [1] "position 3 cylinder CC339490 description: LS CO2 = 404.23 O2 = -634.9" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.1 O2 = -572.2" [1] "position 5 cylinder CB10100 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CB10023 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 387.28 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.95 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 6 8 [4,] 9 10 [5,] 11 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 10 0.001878588 0.008141985 0.005705378 2 3.509531 384.3994 2 3 11 20 0.008837355 0.015100058 0.014055512 2 -6.301016 457.3328 4 4 288 297 0.203670139 0.209932899 0.207498416 2 3.506062 384.8625 5 2 298 306 0.210628270 0.216195573 0.214109053 2 -25.739982 525.0635 6 5 307 316 0.217590133 0.223853009 0.222807943 NA -7.549625 442.9176 10 2 585 594 0.412465249 0.418728009 0.416291999 3 -25.771391 530.1210 11 4 595 604 0.419423669 0.425683247 0.423248897 3 3.465250 381.2067 12 3 605 614 0.426378675 0.432641869 0.431598720 3 -6.318836 465.1735 16 4 882 891 0.621214699 0.627478009 0.625041254 2 3.450945 385.1789 17 2 892 901 0.628173611 0.634436343 0.632000723 2 -25.783414 529.3344 19 2 1165 1174 0.829958623 0.836217795 0.833783822 3 -25.820477 528.9629 20 4 1175 1184 0.836913310 0.843173322 0.840739030 3 3.421547 382.9418 21 5 1185 1194 0.843868692 0.850128472 0.849085185 NA -7.298937 443.9841 22 3 1195 1204 0.850824074 0.857086863 0.856043678 3 -6.372937 465.3321 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.184881 1.315632 0.0032287990 0.6038554 0.0084787023 2.7056264 2 1.184787 1.315515 -0.0021825628 -1.6234283 0.0059944869 2.1837718 4 1.182651 1.313211 -0.0002733232 0.3690303 0.0021323403 3.6138583 5 1.182710 1.313401 -0.0034367602 -2.4067585 0.0092436432 5.7102492 6 1.182470 1.313040 -0.0014976911 -1.6977166 0.0010606602 2.3303461 10 1.181861 1.312365 -0.0017485047 1.3646073 0.0045526128 3.6856121 11 1.181599 1.312086 0.0001455593 -0.7235887 0.0039680645 2.1642460 12 1.181826 1.312336 0.0010414470 0.4169052 0.0031861758 0.7058396 16 1.181332 1.311757 -0.0003831264 -0.1732391 0.0044729392 1.6446359 17 1.181347 1.311788 -0.0006833928 -1.3011607 0.0045808629 3.6622671 19 1.179795 1.310031 -0.0010022687 0.7025828 0.0025812549 2.0823799 20 1.179759 1.310005 0.0004040720 -1.2065140 0.0044431867 4.5553237 21 1.179522 1.309730 -0.0011231748 -0.3083272 0.0007954951 0.4697970 22 1.179421 1.309642 -0.0017862064 2.0569422 0.0064562401 2.6929377 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.958 co2l1 = 0.944 co2l0 = 0" [1] "co2l0 = -199.63 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "105 out of 440 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "335 out of 1203 1-min values rejected as stack air" [1] "313 out of 833 Line 1 1-min values rejected as stack air" [1] "22 out of 370 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"